PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
Reset
Gene Pathway Family Confidence Status
OoffiChr01g00016.1 Alkaloid PMT low borderline
OoffiChr01g00547.1 Alkaloid PMT medium pass
OoffiChr01g00592.1 Alkaloid PMT medium pass
OoffiChr01g01184.1 Alkaloid PMT medium pass
OoffiChr01g01403.1 Alkaloid PMT low borderline
OoffiChr01g01998.1 Alkaloid PMT low borderline
OoffiChr01g02905.1 Alkaloid PMT low borderline
OoffiChr01g03811.1 Alkaloid PMT low borderline
OoffiChr01g03811.2 Alkaloid PMT low borderline
OoffiChr02g00953.1 Alkaloid PMT low borderline
OoffiChr02g01017.1 Alkaloid PMT medium borderline
OoffiChr04g00227.1 Alkaloid PMT medium pass
OoffiChr04g00239.1 Alkaloid PMT medium pass
OoffiChr04g01740.1 Alkaloid PMT low borderline
OoffiChr05g00230.1 Alkaloid PMT medium pass
OoffiChr05g00472.1 Alkaloid PMT medium pass
OoffiChr05g00498.1 Alkaloid PMT medium borderline
OoffiChr05g00807.1 Alkaloid PMT medium pass
OoffiChr06g00534.1 Alkaloid PMT low borderline
OoffiChr06g00557.1 Alkaloid PMT low borderline
OoffiChr06g00558.1 Alkaloid PMT low borderline
OoffiChr06g01568.1 Alkaloid PMT medium borderline
OoffiChr06g01568.2 Alkaloid PMT medium borderline
OoffiChr06g01568.3 Alkaloid PMT medium borderline
OoffiChr06g01568.4 Alkaloid PMT medium borderline
OoffiChr06g01568.5 Alkaloid PMT medium borderline
OoffiChr06g01733.1 Alkaloid PMT medium pass
OoffiChr06g01747.1 Alkaloid PMT medium pass
OoffiChr06g02311.1 Alkaloid PMT medium pass
OoffiChr06g02312.1 Alkaloid PMT medium pass
OoffiChr06g02405.1 Alkaloid PMT medium pass
OoffiChr07g00513.1 Alkaloid PMT medium pass
OoffiChr08g00561.1 Alkaloid PMT low borderline
OoffiChr08g01746.2 Alkaloid PMT low borderline
OoffiChr09g00759.1 Alkaloid PMT medium pass
OoffiChr09g00875.1 Alkaloid PMT low borderline
OoffiChr10g00024.1 Alkaloid PMT medium pass
OoffiChr10g00027.1 Alkaloid PMT low borderline
OoffiChr10g00028.1 Alkaloid PMT medium pass
OoffiChr10g00029.1 Alkaloid PMT medium pass
OoffiChr10g01260.1 Alkaloid PMT medium pass
OoffiChr12g01257.1 Alkaloid PMT low borderline