PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: RAS
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Gene Pathway Family Confidence Status
OoffiChr01g00016.1 Rosmarinic Acid RAS medium pass
OoffiChr01g00547.1 Rosmarinic Acid RAS low borderline
OoffiChr01g00592.1 Rosmarinic Acid RAS low borderline
OoffiChr01g00849.1 Rosmarinic Acid RAS low borderline
OoffiChr01g01184.1 Rosmarinic Acid RAS low borderline
OoffiChr01g01389.1 Rosmarinic Acid RAS medium pass
OoffiChr01g01403.1 Rosmarinic Acid RAS medium pass
OoffiChr01g01998.1 Rosmarinic Acid RAS low borderline
OoffiChr01g02905.1 Rosmarinic Acid RAS medium pass
OoffiChr02g00133.1 Rosmarinic Acid RAS low borderline
OoffiChr02g01274.1 Rosmarinic Acid RAS low borderline
OoffiChr02g02109.1 Rosmarinic Acid RAS medium pass
OoffiChr02g02109.2 Rosmarinic Acid RAS medium pass
OoffiChr02g02747.1 Rosmarinic Acid RAS low borderline
OoffiChr04g00227.1 Rosmarinic Acid RAS low borderline
OoffiChr04g01137.1 Rosmarinic Acid RAS medium pass
OoffiChr04g01177.1 Rosmarinic Acid RAS medium pass
OoffiChr04g01742.1 Rosmarinic Acid RAS low borderline
OoffiChr04g02118.1 Rosmarinic Acid RAS medium pass
OoffiChr05g00116.1 Rosmarinic Acid RAS medium pass
OoffiChr05g00472.1 Rosmarinic Acid RAS low borderline
OoffiChr05g00815.1 Rosmarinic Acid RAS low borderline
OoffiChr05g01879.1 Rosmarinic Acid RAS low borderline
OoffiChr06g00343.1 Rosmarinic Acid RAS medium pass
OoffiChr06g00534.1 Rosmarinic Acid RAS medium pass
OoffiChr06g00557.1 Rosmarinic Acid RAS medium pass
OoffiChr06g00558.1 Rosmarinic Acid RAS medium pass
OoffiChr06g02312.1 Rosmarinic Acid RAS low borderline
OoffiChr06g02405.1 Rosmarinic Acid RAS low borderline
OoffiChr07g00737.1 Rosmarinic Acid RAS medium pass
OoffiChr07g00928.1 Rosmarinic Acid RAS medium pass
OoffiChr08g00561.1 Rosmarinic Acid RAS medium pass
OoffiChr08g01746.2 Rosmarinic Acid RAS medium pass
OoffiChr09g00759.1 Rosmarinic Acid RAS medium pass
OoffiChr10g00633.1 Rosmarinic Acid RAS low borderline
OoffiChr10g01260.1 Rosmarinic Acid RAS medium pass
OoffiChr11g01667.1 Rosmarinic Acid RAS low borderline
OoffiChr11g01667.2 Rosmarinic Acid RAS low borderline
OoffiChr12g01257.1 Rosmarinic Acid RAS low borderline