PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
OoffiChr01g02837.1 Alkaloid GS low borderline
OoffiChr02g00632.1 Alkaloid GS high pass
OoffiChr02g01860.1 Alkaloid GS low borderline
OoffiChr02g01860.2 Alkaloid GS low borderline
OoffiChr02g03164.1 Alkaloid GS low borderline
OoffiChr03g00023.1 Alkaloid GS low borderline
OoffiChr03g00855.1 Alkaloid GS high pass
OoffiChr04g00033.1 Alkaloid GS low borderline
OoffiChr04g00033.2 Alkaloid GS low borderline
OoffiChr04g00195.1 Alkaloid GS high pass
OoffiChr04g00522.1 Alkaloid GS low borderline
OoffiChr04g00523.1 Alkaloid GS low borderline
OoffiChr04g00526.1 Alkaloid GS low borderline
OoffiChr04g00591.1 Alkaloid GS low borderline
OoffiChr04g01764.1 Alkaloid GS high pass
OoffiChr04g01764.2 Alkaloid GS high pass
OoffiChr04g01764.3 Alkaloid GS high pass
OoffiChr05g00916.1 Alkaloid GS low borderline
OoffiChr08g00079.1 Alkaloid GS medium pass
OoffiChr08g00560.1 Alkaloid GS high pass
OoffiChr08g01013.1 Alkaloid GS low borderline
OoffiChr08g01543.1 Alkaloid GS high pass
OoffiChr08g01776.1 Alkaloid GS medium pass
OoffiChr09g00646.1 Alkaloid GS medium pass
OoffiChr09g00982.4 Alkaloid GS low borderline
OoffiChr09g01205.1 Alkaloid GS low borderline
OoffiChr09g01208.1 Alkaloid GS low borderline
OoffiChr09g01209.1 Alkaloid GS low borderline
OoffiChr10g01576.1 Alkaloid GS low borderline
OoffiChr12g00420.1 Alkaloid GS low borderline