PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
Reset
Gene Pathway Family Confidence Status Best Target
OoffiChr01g00612.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr01g01391.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr03g01922.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr03g01923.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr03g02769.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr04g01631.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
OoffiChr04g01632.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
OoffiChr06g00481.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr06g00908.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr07g01499.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr09g00485.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr09g00486.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr09g00934.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr09g00935.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01357.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01358.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01359.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01359.4 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01360.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01360.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01360.3 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01597.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01601.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01603.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01604.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01605.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01606.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01606.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01606.3 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01606.4 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01606.5 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr10g01608.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OoffiChr11g00418.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA