PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status
OoffiChr01g00776.1 Phenylpropanoid CSE medium pass
OoffiChr01g01279.1 Phenylpropanoid CSE medium pass
OoffiChr01g01279.2 Phenylpropanoid CSE medium pass
OoffiChr01g01286.1 Phenylpropanoid CSE medium pass
OoffiChr01g01287.1 Phenylpropanoid CSE medium pass
OoffiChr01g01383.1 Phenylpropanoid CSE medium pass
OoffiChr01g01384.1 Phenylpropanoid CSE medium pass
OoffiChr01g01991.1 Phenylpropanoid CSE medium pass
OoffiChr01g01992.1 Phenylpropanoid CSE medium pass
OoffiChr01g01992.2 Phenylpropanoid CSE medium pass
OoffiChr01g01992.3 Phenylpropanoid CSE low borderline
OoffiChr01g03264.1 Phenylpropanoid CSE medium pass
OoffiChr01g03564.2 Phenylpropanoid CSE low borderline
OoffiChr01g04103.1 Phenylpropanoid CSE medium pass
OoffiChr02g00808.1 Phenylpropanoid CSE medium pass
OoffiChr02g01516.1 Phenylpropanoid CSE medium pass
OoffiChr02g02625.1 Phenylpropanoid CSE medium pass
OoffiChr02g03373.1 Phenylpropanoid CSE medium pass
OoffiChr02g03373.2 Phenylpropanoid CSE medium pass
OoffiChr04g00279.1 Phenylpropanoid CSE medium pass
OoffiChr04g00280.1 Phenylpropanoid CSE medium pass
OoffiChr04g00430.1 Phenylpropanoid CSE medium pass
OoffiChr04g01895.2 Phenylpropanoid CSE low borderline
OoffiChr04g01895.3 Phenylpropanoid CSE low borderline
OoffiChr04g01895.4 Phenylpropanoid CSE low borderline
OoffiChr04g01895.5 Phenylpropanoid CSE low borderline
OoffiChr04g02030.1 Phenylpropanoid CSE medium pass
OoffiChr04g02150.1 Phenylpropanoid CSE medium pass
OoffiChr04g02152.1 Phenylpropanoid CSE medium pass
OoffiChr05g00057.1 Phenylpropanoid CSE medium pass
OoffiChr05g01102.1 Phenylpropanoid CSE medium pass
OoffiChr05g01838.1 Phenylpropanoid CSE medium pass
OoffiChr06g01130.1 Phenylpropanoid CSE medium pass
OoffiChr07g00058.1 Phenylpropanoid CSE medium pass
OoffiChr07g00539.1 Phenylpropanoid CSE medium pass
OoffiChr08g00397.1 Phenylpropanoid CSE medium pass
OoffiChr08g01867.1 Phenylpropanoid CSE medium pass
OoffiChr09g00866.2 Phenylpropanoid CSE medium pass
OoffiChr09g01181.1 Phenylpropanoid CSE medium pass
OoffiChr09g01586.1 Phenylpropanoid CSE medium pass
OoffiChr09g01594.1 Phenylpropanoid CSE medium pass
OoffiChr09g01596.1 Phenylpropanoid CSE medium pass
OoffiChr09g01598.1 Phenylpropanoid CSE medium pass
OoffiChr09g01600.1 Phenylpropanoid CSE medium pass
OoffiChr11g00516.1 Phenylpropanoid CSE medium pass
OoffiChr11g00682.1 Phenylpropanoid CSE medium pass
OoffiChr12g00951.1 Phenylpropanoid CSE medium pass