PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FNS
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Gene Pathway Family Confidence Status
OoffiChr01g02796.1 Flavonoid FNS medium borderline
OoffiChr01g03999.1 Flavonoid FNS medium borderline
OoffiChr02g00070.1 Flavonoid FNS low borderline
OoffiChr02g00512.1 Flavonoid FNS medium borderline
OoffiChr02g00512.2 Flavonoid FNS medium borderline
OoffiChr02g00664.1 Flavonoid FNS medium borderline
OoffiChr02g00843.1 Flavonoid FNS medium borderline
OoffiChr02g00843.2 Flavonoid FNS medium borderline
OoffiChr02g00881.1 Flavonoid FNS medium borderline
OoffiChr02g01493.1 Flavonoid FNS medium borderline
OoffiChr02g01565.1 Flavonoid FNS medium borderline
OoffiChr02g01565.2 Flavonoid FNS medium borderline
OoffiChr02g01565.3 Flavonoid FNS medium borderline
OoffiChr02g02449.1 Flavonoid FNS low borderline
OoffiChr03g02060.1 Flavonoid FNS medium borderline
OoffiChr03g02070.1 Flavonoid FNS medium borderline
OoffiChr03g02128.2 Flavonoid FNS medium borderline
OoffiChr03g03432.1 Flavonoid FNS medium borderline
OoffiChr04g00119.1 Flavonoid FNS medium borderline
OoffiChr04g00120.1 Flavonoid FNS medium borderline
OoffiChr04g00121.1 Flavonoid FNS medium borderline
OoffiChr04g01059.1 Flavonoid FNS medium borderline
OoffiChr04g02024.1 Flavonoid FNS medium borderline
OoffiChr05g01835.1 Flavonoid FNS medium borderline
OoffiChr05g01836.1 Flavonoid FNS medium borderline
OoffiChr05g01907.1 Flavonoid FNS medium borderline
OoffiChr06g00095.1 Flavonoid FNS medium borderline
OoffiChr06g00724.1 Flavonoid FNS medium borderline
OoffiChr06g01677.1 Flavonoid FNS medium borderline
OoffiChr06g01690.1 Flavonoid FNS medium borderline
OoffiChr07g01806.1 Flavonoid FNS medium borderline
OoffiChr07g02013.1 Flavonoid FNS medium borderline
OoffiChr08g00050.1 Flavonoid FNS medium pass
OoffiChr09g00453.1 Flavonoid FNS medium borderline
OoffiChr09g00454.1 Flavonoid FNS medium borderline
OoffiChr09g00527.1 Flavonoid FNS low borderline
OoffiChr09g01380.1 Flavonoid FNS medium borderline
OoffiChr10g00284.1 Flavonoid FNS medium borderline
OoffiChr10g00928.2 Flavonoid FNS medium borderline
OoffiChr10g00928.3 Flavonoid FNS medium borderline
OoffiChr10g01301.1 Flavonoid FNS medium borderline
OoffiChr10g01309.1 Flavonoid FNS low borderline
OoffiChr11g00891.1 Flavonoid FNS medium borderline
OoffiChr11g00946.1 Flavonoid FNS medium borderline