PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
OoffiChr01g02397.1 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
OoffiChr01g02397.2 Terpenoid FPPS medium pass FPPS__00010__sp_Q7XYT0_FPPS2_ARTSI
OoffiChr01g02397.3 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
OoffiChr01g02397.4 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
OoffiChr01g02397.5 Terpenoid FPPS medium pass FPPS__00010__sp_Q7XYT0_FPPS2_ARTSI
OoffiChr01g02397.6 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
OoffiChr01g02397.9 Terpenoid FPPS medium pass FPPS__00010__sp_Q7XYT0_FPPS2_ARTSI
OoffiChr01g02428.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
OoffiChr01g02428.2 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
OoffiChr01g02428.3 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
OoffiChr01g03372.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
OoffiChr04g02069.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
OoffiChr04g02069.2 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
OoffiChr04g02069.3 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
OoffiChr04g02069.4 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
OoffiChr04g02070.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
OoffiChr04g02070.2 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
OoffiChr05g02071.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
OoffiChr06g00407.1 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
OoffiChr06g00407.2 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
OoffiChr06g00434.1 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
OoffiChr06g00434.2 Terpenoid FPPS low borderline FPPS__00001__sp_B8XA40_ZFPS_SOLHA
OoffiChr06g00434.3 Terpenoid FPPS low borderline FPPS__00001__sp_B8XA40_ZFPS_SOLHA
OoffiChr06g00434.4 Terpenoid FPPS low borderline FPPS__00001__sp_B8XA40_ZFPS_SOLHA
OoffiChr06g00434.5 Terpenoid FPPS low borderline FPPS__00001__sp_B8XA40_ZFPS_SOLHA
OoffiChr06g00434.6 Terpenoid FPPS low borderline FPPS__00001__sp_B8XA40_ZFPS_SOLHA
OoffiChr07g02362.1 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
OoffiChr07g02362.2 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA