Oryza officinalis (oryza_officinalis)
Imported from atlas release summary for Oryza officinalis.
1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1998
Candidate Genes
BAHD
6.71%
C4H
5.55%
C3'H/CYP98A
5.38%
POD
4.89%
4CL
3.86%
T3O
3.34%
UGT
3.3%
NMT
3.16%
Other Families
63.81%
More Families (97)
IFS
147
3.03%
UFGT
146
3.01%
7DLGT
143
2.95%
CYP76
141
2.91%
STR
120
2.48%
SMT1/SMT2/SMT3
104
2.15%
CAS
98
2.02%
F3'H/CYP75B
96
1.98%
CYP71
96
1.98%
BR6OX2/CYP85A2
95
1.96%
DWF4/CYP90B1
90
1.86%
F3H
89
1.84%
SGD
73
1.51%
TPS
71
1.46%
CAD
64
1.32%
GES
59
1.22%
CCR
56
1.16%
TRI/TRII
49
1.01%
CSE
47
0.97%
ANR
46
0.95%
SLS
45
0.93%
FNS
44
0.91%
HCT
44
0.91%
PMT
42
0.87%
PYKS
42
0.87%
IFR
42
0.87%
LAC
42
0.87%
G8O/G8H
41
0.85%
CODM/T6ODM
41
0.85%
H6H
39
0.8%
RAS
39
0.8%
NCS
33
0.68%
T16H
31
0.64%
GS
30
0.62%
DFR
30
0.62%
CYP51G1
30
0.62%
COMT
29
0.6%
F5H/CYP84A
28
0.58%
FPPS
28
0.58%
CYP90D1
26
0.54%
BR6OX1/CYP85A1
26
0.54%
CNMT
24
0.5%
16OMT
24
0.5%
F3'5'H/CYP75A
24
0.5%
CHS
24
0.5%
PAL
24
0.5%
CPD/CYP90A1
24
0.5%
CPR
20
0.41%
COR
19
0.39%
BBE
16
0.33%
MPO
16
0.33%
8HGO
16
0.33%
SQS/FDFT1
15
0.31%
IO
14
0.29%
LAMT
14
0.29%
TAT
14
0.29%
ANS/LDOX
13
0.27%
7DLH
12
0.25%
AACT
12
0.25%
GGPPS
12
0.25%
SQE
11
0.23%
CCoAOMT
10
0.21%
CYP80B1
9
0.19%
ROT3/CYP90C1
9
0.19%
CHI
8
0.17%
HPPR
8
0.17%
MCT/IspD
8
0.17%
MVK
8
0.17%
XMT_MXMT_DXMT
7
0.14%
SMO1/SMO2
7
0.14%
DXS
7
0.14%
CYP719
6
0.12%
HMGR
6
0.12%
TDC
5
0.1%
HYD1
5
0.1%
FLS
4
0.08%
DET2
4
0.08%
CMK/IspE
4
0.08%
PMK
4
0.08%
ADC
3
0.06%
TYDC_DDC
3
0.06%
DWF5
3
0.06%
FK
3
0.06%
DWF1
3
0.06%
DXR
3
0.06%
IDI
3
0.06%
HDR/IspH
3
0.06%
HMGS
3
0.06%
ISY
2
0.04%
6OMT_4OMT_SOMT
2
0.04%
ODC
2
0.04%
DWF7
2
0.04%
CPI1
2
0.04%
MDS/IspF
2
0.04%
MVD
2
0.04%
HDS/IspG
2
0.04%
CYP80F1
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 584 | 19 | BAHD (239) | View species results |
| Alkaloid pathway | 440 | 23 | 7DLGT (66) | View species results |
| Phenylpropanoid pathway | 392 | 11 | POD (200) | View species results |
| Flavonoid pathway | 249 | 12 | UFGT (138) | View species results |
| Steroid pathway | 177 | 13 | SMT1/SMT2/SMT3 (67) | View species results |
| Rosmarinic acid pathway | 156 | 7 | C4H (67) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1683 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 408 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| OoffiChr01g02727.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| OoffiChr01g02727.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| OoffiChr01g02727.3 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OoffiChr01g02728.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OoffiChr01g03855.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| OoffiChr01g03856.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| OoffiChr02g02273.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OoffiChr03g01119.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| OoffiChr03g01120.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| OoffiChr03g01121.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| OoffiChr03g01121.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| OoffiChr03g01121.3 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| OoffiChr03g01121.4 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| OoffiChr03g01121.5 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| OoffiChr03g01298.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OoffiChr03g02316.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| OoffiChr03g02316.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| OoffiChr03g02870.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OoffiChr03g03408.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OoffiChr04g00266.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OoffiChr04g00580.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| OoffiChr04g00580.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| OoffiChr04g00939.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| OoffiChr04g01301.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| OoffiChr05g00248.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OoffiChr06g00559.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| OoffiChr07g00374.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| OoffiChr07g00374.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| OoffiChr07g01951.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OoffiChr07g02393.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OoffiChr07g02394.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OoffiChr07g02394.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OoffiChr07g02395.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OoffiChr07g02397.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OoffiChr07g02398.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OoffiChr07g02399.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OoffiChr07g02401.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OoffiChr07g02403.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OoffiChr07g02541.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| OoffiChr07g02590.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OoffiChr09g00029.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| OoffiChr09g00982.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| OoffiChr10g00957.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| OoffiChr10g01485.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| OoffiChr11g00698.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OoffiChr11g00954.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OoffiChr11g01451.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OoffiChr12g00740.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OoffiChr12g00905.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |