PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPR
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Gene Pathway Family Confidence Status Best Target
OoffiChr01g00427.1 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
OoffiChr01g02676.1 Rosmarinic Acid CPR low borderline CPR__00004__sp_Q0J705_NCPR2_ORYSJ
OoffiChr01g02676.2 Rosmarinic Acid CPR low borderline CPR__00004__sp_Q0J705_NCPR2_ORYSJ
OoffiChr02g00036.1 Rosmarinic Acid CPR medium pass CPR__00003__sp_C5YJG8_NCPR_SORBI
OoffiChr02g01695.1 Rosmarinic Acid CPR low borderline CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
OoffiChr02g01698.4 Rosmarinic Acid CPR low borderline CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
OoffiChr02g01698.5 Rosmarinic Acid CPR low borderline CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
OoffiChr02g01698.6 Rosmarinic Acid CPR low borderline CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
OoffiChr03g01472.1 Rosmarinic Acid CPR medium pass CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
OoffiChr03g01473.1 Rosmarinic Acid CPR medium pass CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
OoffiChr04g02053.1 Rosmarinic Acid CPR medium pass CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
OoffiChr05g01061.1 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
OoffiChr08g00685.1 Rosmarinic Acid CPR medium pass CPR__00004__sp_Q0J705_NCPR2_ORYSJ
OoffiChr08g00685.2 Rosmarinic Acid CPR medium pass CPR__00004__sp_Q0J705_NCPR2_ORYSJ
OoffiChr08g01739.1 Rosmarinic Acid CPR low borderline CPR__00007__sp_Q96327_EBP1_ARATH
OoffiChr08g01739.2 Rosmarinic Acid CPR low borderline CPR__00007__sp_Q96327_EBP1_ARATH
OoffiChr09g01523.1 Rosmarinic Acid CPR medium pass CPR__00005__sp_Q653S9_NCPR3_ORYSJ
OoffiChr10g00390.1 Rosmarinic Acid CPR medium pass CPR__00005__sp_Q653S9_NCPR3_ORYSJ
OoffiChr12g01782.1 Rosmarinic Acid CPR low borderline CPR__00007__sp_Q96327_EBP1_ARATH
OoffiChr12g01782.2 Rosmarinic Acid CPR low borderline CPR__00007__sp_Q96327_EBP1_ARATH