PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
Reset
Gene Pathway Family Confidence Status
OoffiChr01g01519.1 Steroid CYP90D1 low borderline
OoffiChr02g00880.1 Steroid CYP90D1 low borderline
OoffiChr02g01493.1 Steroid CYP90D1 low borderline
OoffiChr03g00113.1 Steroid CYP90D1 low borderline
OoffiChr03g01010.1 Steroid CYP90D1 low borderline
OoffiChr03g01498.1 Steroid CYP90D1 low borderline
OoffiChr03g02128.1 Steroid CYP90D1 medium borderline
OoffiChr03g02128.2 Steroid CYP90D1 medium borderline
OoffiChr03g03432.1 Steroid CYP90D1 medium borderline
OoffiChr04g00119.1 Steroid CYP90D1 low borderline
OoffiChr04g01023.1 Steroid CYP90D1 medium borderline
OoffiChr04g01023.2 Steroid CYP90D1 medium borderline
OoffiChr04g01512.1 Steroid CYP90D1 medium borderline
OoffiChr07g00984.1 Steroid CYP90D1 low borderline
OoffiChr07g01579.7 Steroid CYP90D1 medium borderline
OoffiChr07g01580.1 Steroid CYP90D1 medium borderline
OoffiChr07g02013.1 Steroid CYP90D1 low borderline
OoffiChr07g02493.1 Steroid CYP90D1 low borderline
OoffiChr09g01367.1 Steroid CYP90D1 low borderline
OoffiChr10g00298.1 Steroid CYP90D1 low borderline
OoffiChr10g00316.1 Steroid CYP90D1 low borderline
OoffiChr10g00466.1 Steroid CYP90D1 low borderline
OoffiChr12g00118.1 Steroid CYP90D1 low borderline
OoffiChr12g00221.1 Steroid CYP90D1 low borderline
OoffiChr12g00367.1 Steroid CYP90D1 medium borderline
OoffiChr12g00408.1 Steroid CYP90D1 medium borderline