PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
OoffiChr01g00535.1 Flavonoid F3H medium borderline
OoffiChr01g00612.1 Flavonoid F3H low borderline
OoffiChr01g00720.1 Flavonoid F3H medium borderline
OoffiChr01g01329.1 Flavonoid F3H low borderline
OoffiChr01g01391.1 Flavonoid F3H medium borderline
OoffiChr01g01481.1 Flavonoid F3H medium borderline
OoffiChr01g01838.1 Flavonoid F3H medium borderline
OoffiChr01g02745.1 Flavonoid F3H low borderline
OoffiChr01g03215.1 Flavonoid F3H medium borderline
OoffiChr01g03529.1 Flavonoid F3H medium borderline
OoffiChr01g03883.1 Flavonoid F3H medium borderline
OoffiChr02g01086.1 Flavonoid F3H medium borderline
OoffiChr02g01362.1 Flavonoid F3H low borderline
OoffiChr02g01980.1 Flavonoid F3H low borderline
OoffiChr02g02894.1 Flavonoid F3H medium borderline
OoffiChr02g02925.1 Flavonoid F3H medium borderline
OoffiChr03g00130.1 Flavonoid F3H medium borderline
OoffiChr03g00645.1 Flavonoid F3H medium borderline
OoffiChr03g01243.1 Flavonoid F3H medium borderline
OoffiChr03g01426.1 Flavonoid F3H medium borderline
OoffiChr03g02195.1 Flavonoid F3H medium borderline
OoffiChr03g02195.2 Flavonoid F3H medium borderline
OoffiChr03g02198.1 Flavonoid F3H medium borderline
OoffiChr03g02559.1 Flavonoid F3H medium pass
OoffiChr03g02769.1 Flavonoid F3H low borderline
OoffiChr03g03562.1 Flavonoid F3H medium borderline
OoffiChr03g03570.1 Flavonoid F3H medium borderline
OoffiChr04g00393.1 Flavonoid F3H medium pass
OoffiChr04g01240.1 Flavonoid F3H medium borderline
OoffiChr04g01561.1 Flavonoid F3H medium borderline
OoffiChr04g01562.1 Flavonoid F3H medium borderline
OoffiChr04g01989.1 Flavonoid F3H low borderline
OoffiChr04g01989.2 Flavonoid F3H low borderline
OoffiChr04g02103.1 Flavonoid F3H medium borderline
OoffiChr04g02133.1 Flavonoid F3H medium borderline
OoffiChr05g00172.1 Flavonoid F3H medium borderline
OoffiChr05g00305.1 Flavonoid F3H medium borderline
OoffiChr05g00306.1 Flavonoid F3H medium borderline
OoffiChr05g00369.1 Flavonoid F3H medium pass
OoffiChr05g00462.1 Flavonoid F3H medium borderline
OoffiChr05g00598.1 Flavonoid F3H medium pass
OoffiChr05g01407.1 Flavonoid F3H medium pass
OoffiChr05g02207.1 Flavonoid F3H medium pass
OoffiChr06g00386.1 Flavonoid F3H medium borderline
OoffiChr06g00481.1 Flavonoid F3H low borderline
OoffiChr06g00482.1 Flavonoid F3H medium borderline
OoffiChr06g00483.1 Flavonoid F3H medium borderline
OoffiChr06g00483.2 Flavonoid F3H medium borderline
OoffiChr06g00484.1 Flavonoid F3H low borderline
OoffiChr06g00908.1 Flavonoid F3H medium borderline