PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
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Gene Pathway Family Confidence Status
OoffiChr01g01388.1 Alkaloid SLS medium borderline
OoffiChr01g01519.1 Alkaloid SLS medium borderline
OoffiChr01g01952.1 Alkaloid SLS medium borderline
OoffiChr01g02076.3 Alkaloid SLS medium borderline
OoffiChr01g02077.1 Alkaloid SLS medium borderline
OoffiChr01g02077.2 Alkaloid SLS medium borderline
OoffiChr01g02077.3 Alkaloid SLS medium pass
OoffiChr01g02078.1 Alkaloid SLS medium borderline
OoffiChr01g02078.2 Alkaloid SLS medium borderline
OoffiChr01g02078.3 Alkaloid SLS medium borderline
OoffiChr01g02079.2 Alkaloid SLS medium borderline
OoffiChr01g02465.1 Alkaloid SLS medium borderline
OoffiChr01g02465.2 Alkaloid SLS medium borderline
OoffiChr01g02652.1 Alkaloid SLS medium borderline
OoffiChr01g02652.2 Alkaloid SLS medium borderline
OoffiChr02g00512.1 Alkaloid SLS medium borderline
OoffiChr02g00512.2 Alkaloid SLS medium borderline
OoffiChr02g00767.1 Alkaloid SLS medium borderline
OoffiChr02g03298.1 Alkaloid SLS medium borderline
OoffiChr03g00854.1 Alkaloid SLS medium borderline
OoffiChr03g01678.1 Alkaloid SLS medium pass
OoffiChr03g01678.2 Alkaloid SLS medium pass
OoffiChr03g01680.1 Alkaloid SLS medium borderline
OoffiChr03g01680.2 Alkaloid SLS medium borderline
OoffiChr03g01680.3 Alkaloid SLS medium borderline
OoffiChr03g01680.4 Alkaloid SLS medium borderline
OoffiChr04g01530.1 Alkaloid SLS medium borderline
OoffiChr05g01189.1 Alkaloid SLS medium borderline
OoffiChr05g01339.1 Alkaloid SLS medium borderline
OoffiChr05g01339.2 Alkaloid SLS medium borderline
OoffiChr06g00289.1 Alkaloid SLS low borderline
OoffiChr06g00573.1 Alkaloid SLS medium borderline
OoffiChr06g00574.1 Alkaloid SLS medium borderline
OoffiChr06g01767.1 Alkaloid SLS medium borderline
OoffiChr07g01163.1 Alkaloid SLS medium borderline
OoffiChr07g02235.1 Alkaloid SLS medium borderline
OoffiChr07g02236.1 Alkaloid SLS medium borderline
OoffiChr07g02237.1 Alkaloid SLS medium borderline
OoffiChr07g02237.2 Alkaloid SLS medium borderline
OoffiChr07g02296.1 Alkaloid SLS medium borderline
OoffiChr08g01160.1 Alkaloid SLS medium borderline
OoffiChr10g01484.1 Alkaloid SLS medium borderline
OoffiChr10g01484.2 Alkaloid SLS medium borderline
OoffiChr11g00198.1 Alkaloid SLS medium borderline
OoffiChr12g00471.1 Alkaloid SLS medium borderline