PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP71
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Gene Pathway Family Confidence Status
OoffiChr01g00860.1 Terpenoid CYP71 medium borderline
OoffiChr01g00860.2 Terpenoid CYP71 low borderline
OoffiChr01g01155.1 Terpenoid CYP71 medium pass
OoffiChr01g01496.1 Terpenoid CYP71 medium borderline
OoffiChr01g01845.1 Terpenoid CYP71 low borderline
OoffiChr01g03999.1 Terpenoid CYP71 medium borderline
OoffiChr01g03999.2 Terpenoid CYP71 medium borderline
OoffiChr02g00081.1 Terpenoid CYP71 medium pass
OoffiChr02g00137.1 Terpenoid CYP71 medium pass
OoffiChr02g00512.1 Terpenoid CYP71 low borderline
OoffiChr02g00512.2 Terpenoid CYP71 low borderline
OoffiChr02g00606.1 Terpenoid CYP71 low borderline
OoffiChr02g00611.1 Terpenoid CYP71 medium borderline
OoffiChr02g00613.1 Terpenoid CYP71 medium borderline
OoffiChr02g00615.1 Terpenoid CYP71 medium pass
OoffiChr02g00616.1 Terpenoid CYP71 medium borderline
OoffiChr02g00621.1 Terpenoid CYP71 medium borderline
OoffiChr02g00623.1 Terpenoid CYP71 medium borderline
OoffiChr02g00625.1 Terpenoid CYP71 medium borderline
OoffiChr02g00664.1 Terpenoid CYP71 low borderline
OoffiChr02g00776.1 Terpenoid CYP71 low borderline
OoffiChr02g00776.2 Terpenoid CYP71 low borderline
OoffiChr02g00776.6 Terpenoid CYP71 low borderline
OoffiChr02g00776.7 Terpenoid CYP71 low borderline
OoffiChr02g00776.8 Terpenoid CYP71 low borderline
OoffiChr02g00876.1 Terpenoid CYP71 medium borderline
OoffiChr02g00877.1 Terpenoid CYP71 medium borderline
OoffiChr02g00880.1 Terpenoid CYP71 medium borderline
OoffiChr02g01493.1 Terpenoid CYP71 medium borderline
OoffiChr02g01676.1 Terpenoid CYP71 medium borderline
OoffiChr02g01751.1 Terpenoid CYP71 medium borderline
OoffiChr02g01887.1 Terpenoid CYP71 medium borderline
OoffiChr02g02039.1 Terpenoid CYP71 medium borderline
OoffiChr02g02040.1 Terpenoid CYP71 low borderline
OoffiChr02g02860.1 Terpenoid CYP71 low borderline
OoffiChr02g02860.2 Terpenoid CYP71 low borderline
OoffiChr03g00693.1 Terpenoid CYP71 low borderline
OoffiChr03g00693.2 Terpenoid CYP71 low borderline
OoffiChr03g01934.1 Terpenoid CYP71 medium borderline
OoffiChr03g01986.1 Terpenoid CYP71 medium borderline
OoffiChr03g02059.1 Terpenoid CYP71 medium borderline
OoffiChr04g00260.1 Terpenoid CYP71 medium borderline
OoffiChr04g00264.1 Terpenoid CYP71 medium borderline
OoffiChr04g00515.1 Terpenoid CYP71 low borderline
OoffiChr05g00019.1 Terpenoid CYP71 medium pass
OoffiChr05g01837.1 Terpenoid CYP71 medium borderline
OoffiChr06g00125.1 Terpenoid CYP71 medium pass
OoffiChr06g00713.1 Terpenoid CYP71 low borderline
OoffiChr06g01456.1 Terpenoid CYP71 medium borderline
OoffiChr06g01457.1 Terpenoid CYP71 medium borderline