PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status
OoffiChr01g01668.1 Phenylpropanoid CAD medium borderline
OoffiChr01g01732.1 Phenylpropanoid CAD low borderline
OoffiChr01g03216.1 Phenylpropanoid CAD low borderline
OoffiChr01g03217.1 Phenylpropanoid CAD medium borderline
OoffiChr02g00632.1 Phenylpropanoid CAD medium pass
OoffiChr02g01471.1 Phenylpropanoid CAD low borderline
OoffiChr02g01875.1 Phenylpropanoid CAD low borderline
OoffiChr02g01875.2 Phenylpropanoid CAD low borderline
OoffiChr02g01884.1 Phenylpropanoid CAD low borderline
OoffiChr03g00587.1 Phenylpropanoid CAD low borderline
OoffiChr03g00855.1 Phenylpropanoid CAD medium pass
OoffiChr03g01535.1 Phenylpropanoid CAD low borderline
OoffiChr03g01659.1 Phenylpropanoid CAD low borderline
OoffiChr03g03315.1 Phenylpropanoid CAD medium borderline
OoffiChr03g03315.2 Phenylpropanoid CAD medium borderline
OoffiChr04g00042.1 Phenylpropanoid CAD medium pass
OoffiChr04g00042.2 Phenylpropanoid CAD medium pass
OoffiChr04g00195.1 Phenylpropanoid CAD medium pass
OoffiChr04g00265.1 Phenylpropanoid CAD low borderline
OoffiChr04g00265.2 Phenylpropanoid CAD low borderline
OoffiChr04g00265.4 Phenylpropanoid CAD low borderline
OoffiChr04g00269.1 Phenylpropanoid CAD low borderline
OoffiChr04g00269.2 Phenylpropanoid CAD low borderline
OoffiChr04g00461.1 Phenylpropanoid CAD low borderline
OoffiChr04g00462.1 Phenylpropanoid CAD low borderline
OoffiChr04g00470.1 Phenylpropanoid CAD low borderline
OoffiChr04g00474.1 Phenylpropanoid CAD medium pass
OoffiChr04g00475.1 Phenylpropanoid CAD low borderline
OoffiChr04g00510.1 Phenylpropanoid CAD low borderline
OoffiChr04g00522.1 Phenylpropanoid CAD low borderline
OoffiChr04g00523.1 Phenylpropanoid CAD low borderline
OoffiChr04g01760.1 Phenylpropanoid CAD low borderline
OoffiChr04g01760.3 Phenylpropanoid CAD low borderline
OoffiChr04g01760.4 Phenylpropanoid CAD low borderline
OoffiChr04g01760.5 Phenylpropanoid CAD low borderline
OoffiChr04g01764.1 Phenylpropanoid CAD medium pass
OoffiChr04g01764.2 Phenylpropanoid CAD medium pass
OoffiChr04g01764.3 Phenylpropanoid CAD medium pass
OoffiChr04g01904.1 Phenylpropanoid CAD medium borderline
OoffiChr04g01905.1 Phenylpropanoid CAD medium borderline
OoffiChr04g01908.1 Phenylpropanoid CAD medium borderline
OoffiChr04g01908.2 Phenylpropanoid CAD medium borderline
OoffiChr04g01908.3 Phenylpropanoid CAD medium borderline
OoffiChr07g00481.1 Phenylpropanoid CAD medium borderline
OoffiChr07g00782.1 Phenylpropanoid CAD medium pass
OoffiChr07g00782.3 Phenylpropanoid CAD medium pass
OoffiChr08g00079.1 Phenylpropanoid CAD low borderline
OoffiChr08g00251.1 Phenylpropanoid CAD low borderline
OoffiChr08g00493.1 Phenylpropanoid CAD medium borderline
OoffiChr08g00560.1 Phenylpropanoid CAD medium pass