PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Osat01G0037130.1 Alkaloid 16OMT medium borderline
Osat04G0005450.1 Alkaloid 16OMT medium borderline
Osat05G0027120.1 Alkaloid 16OMT medium borderline
Osat05G0027130.1 Alkaloid 16OMT medium borderline
Osat06G0010380.1 Alkaloid 16OMT medium borderline
Osat06G0012820.1 Alkaloid 16OMT low borderline
Osat06G0012830.1 Alkaloid 16OMT medium borderline
Osat07G0016450.1 Alkaloid 16OMT medium borderline
Osat07G0016520.1 Alkaloid 16OMT medium borderline
Osat07G0016560.1 Alkaloid 16OMT medium borderline
Osat07G0016560.2 Alkaloid 16OMT medium borderline
Osat08G0004070.1 Alkaloid 16OMT medium borderline
Osat08G0004980.1 Alkaloid 16OMT medium borderline
Osat08G0012370.1 Alkaloid 16OMT medium borderline
Osat08G0021840.1 Alkaloid 16OMT medium borderline
Osat09G0008650.1 Alkaloid 16OMT medium borderline
Osat10G0001090.1 Alkaloid 16OMT medium borderline
Osat10G0001110.1 Alkaloid 16OMT medium borderline
Osat10G0022860.1 Alkaloid 16OMT low borderline
Osat11G0009460.1 Alkaloid 16OMT medium borderline
Osat11G0013340.1 Alkaloid 16OMT medium borderline
Osat11G0013360.1 Alkaloid 16OMT medium borderline
Osat11G0013400.1 Alkaloid 16OMT medium borderline
Osat11G0013420.1 Alkaloid 16OMT medium borderline
Osat11G0013430.1 Alkaloid 16OMT medium borderline
Osat11G0013460.1 Alkaloid 16OMT medium borderline
Osat11G0020080.1 Alkaloid 16OMT medium borderline
Osat12G0009430.1 Alkaloid 16OMT medium borderline
Osat12G0014480.1 Alkaloid 16OMT medium borderline
Osat12G0014500.1 Alkaloid 16OMT medium borderline
Osat12G0014670.1 Alkaloid 16OMT medium borderline
Osat12G0014690.1 Alkaloid 16OMT medium borderline
Osat12G0014700.1 Alkaloid 16OMT medium borderline
OsatChrUn0001200.1 Alkaloid 16OMT low borderline
Osat11G0013290.1 Alkaloid 6OMT_4OMT_SOMT medium pass
Osat11G0013300.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
Osat01G0005830.1 Alkaloid 7DLGT high pass
Osat01G0005840.1 Alkaloid 7DLGT low borderline
Osat01G0005850.1 Alkaloid 7DLGT low borderline
Osat01G0006150.1 Alkaloid 7DLGT low borderline
Osat01G0026650.1 Alkaloid 7DLGT low borderline
Osat01G0026660.1 Alkaloid 7DLGT medium pass
Osat01G0028110.1 Alkaloid 7DLGT medium pass
Osat01G0028130.1 Alkaloid 7DLGT low borderline
Osat01G0029200.1 Alkaloid 7DLGT low borderline
Osat01G0029230.1 Alkaloid 7DLGT low borderline
Osat01G0032390.1 Alkaloid 7DLGT medium pass
Osat01G0032400.1 Alkaloid 7DLGT low borderline
Osat01G0033170.1 Alkaloid 7DLGT low borderline
Osat01G0035820.1 Alkaloid 7DLGT medium pass