PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
Osat01G0009730.1 Alkaloid T16H medium borderline
Osat01G0017590.1 Alkaloid T16H medium borderline
Osat01G0023090.1 Alkaloid T16H medium borderline
Osat02G0006740.1 Alkaloid T16H medium borderline
Osat02G0006820.1 Alkaloid T16H medium borderline
Osat02G0018250.1 Alkaloid T16H medium borderline
Osat02G0018290.1 Alkaloid T16H medium borderline
Osat03G0019610.1 Alkaloid T16H medium borderline
Osat03G0023040.1 Alkaloid T16H medium borderline
Osat03G0025530.1 Alkaloid T16H medium borderline
Osat03G0038490.1 Alkaloid T16H low borderline
Osat04G0021760.1 Alkaloid T16H medium borderline
Osat04G0028150.1 Alkaloid T16H medium borderline
Osat04G0028390.2 Alkaloid T16H low borderline
Osat05G0020030.1 Alkaloid T16H medium borderline
Osat05G0027100.1 Alkaloid T16H medium borderline
Osat06G0011980.1 Alkaloid T16H medium borderline
Osat06G0028070.1 Alkaloid T16H medium borderline
Osat06G0028080.1 Alkaloid T16H medium borderline
Osat06G0028130.1 Alkaloid T16H medium borderline
Osat06G0028180.1 Alkaloid T16H medium borderline
Osat07G0008700.1 Alkaloid T16H medium borderline
Osat07G0017770.1 Alkaloid T16H medium borderline
Osat08G0000430.1 Alkaloid T16H medium borderline
Osat08G0000440.1 Alkaloid T16H medium borderline
Osat08G0000450.1 Alkaloid T16H medium borderline
Osat08G0023030.1 Alkaloid T16H medium borderline
Osat09G0016170.1 Alkaloid T16H medium borderline
Osat10G0006220.1 Alkaloid T16H medium borderline
Osat10G0007220.1 Alkaloid T16H medium borderline
Osat10G0007300.1 Alkaloid T16H medium borderline
Osat10G0010970.3 Alkaloid T16H low borderline
Osat10G0010970.4 Alkaloid T16H low borderline
Osat10G0020060.1 Alkaloid T16H medium borderline
Osat11G0012540.1 Alkaloid T16H medium borderline
Osat11G0016410.2 Alkaloid T16H medium pass
Osat11G0016530.1 Alkaloid T16H medium borderline
Osat11G0016540.1 Alkaloid T16H medium pass
Osat11G0019220.1 Alkaloid T16H medium borderline