PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
Osat01G0000430.1 Alkaloid PMT low borderline
Osat01G0006090.1 Alkaloid PMT medium pass
Osat01G0006660.1 Alkaloid PMT medium pass
Osat01G0013970.1 Alkaloid PMT medium pass
Osat01G0017580.1 Alkaloid PMT medium pass
Osat01G0027800.1 Alkaloid PMT medium pass
Osat01G0027810.1 Alkaloid PMT medium pass
Osat02G0010680.1 Alkaloid PMT medium pass
Osat02G0011700.1 Alkaloid PMT medium borderline
Osat02G0011700.2 Alkaloid PMT medium borderline
Osat02G0011700.3 Alkaloid PMT medium borderline
Osat03G0033770.1 Alkaloid PMT low borderline
Osat04G0003890.1 Alkaloid PMT medium pass
Osat04G0004060.1 Alkaloid PMT medium pass
Osat04G0005320.1 Alkaloid PMT medium pass
Osat05G0002900.1 Alkaloid PMT medium pass
Osat05G0005990.1 Alkaloid PMT medium pass
Osat05G0011930.1 Alkaloid PMT medium pass
Osat05G0013800.1 Alkaloid PMT medium pass
Osat06G0006280.1 Alkaloid PMT low borderline
Osat06G0006310.1 Alkaloid PMT medium pass
Osat06G0006330.1 Alkaloid PMT low borderline
Osat06G0021280.1 Alkaloid PMT medium borderline
Osat06G0021280.2 Alkaloid PMT medium borderline
Osat06G0021280.3 Alkaloid PMT medium borderline
Osat06G0021280.4 Alkaloid PMT medium borderline
Osat06G0024990.1 Alkaloid PMT medium pass
Osat06G0025030.1 Alkaloid PMT medium pass
Osat06G0032400.1 Alkaloid PMT medium pass
Osat06G0033320.1 Alkaloid PMT medium pass
Osat07G0013680.1 Alkaloid PMT medium borderline
Osat07G0013680.2 Alkaloid PMT medium borderline
Osat08G0007480.1 Alkaloid PMT low borderline
Osat08G0028200.1 Alkaloid PMT low borderline
Osat08G0028200.2 Alkaloid PMT low borderline
Osat09G0013760.1 Alkaloid PMT medium pass
Osat10G0000370.1 Alkaloid PMT medium pass
Osat10G0000380.1 Alkaloid PMT medium pass
Osat10G0000490.1 Alkaloid PMT medium pass
Osat10G0000560.1 Alkaloid PMT medium pass
Osat10G0000580.1 Alkaloid PMT medium pass
Osat10G0001340.1 Alkaloid PMT medium pass
Osat10G0001360.1 Alkaloid PMT medium pass
Osat10G0019340.1 Alkaloid PMT medium pass
Osat11G0006010.1 Alkaloid PMT low borderline
Osat11G0006130.1 Alkaloid PMT low borderline
Osat12G0017080.1 Alkaloid PMT low borderline