PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Osat01G0005830.1 Flavonoid UFGT medium pass
Osat01G0005840.1 Flavonoid UFGT medium pass
Osat01G0005850.1 Flavonoid UFGT medium pass
Osat01G0006150.1 Flavonoid UFGT medium pass
Osat01G0026650.1 Flavonoid UFGT high pass
Osat01G0026660.1 Flavonoid UFGT medium pass
Osat01G0028110.1 Flavonoid UFGT medium pass
Osat01G0028130.1 Flavonoid UFGT medium pass
Osat01G0029200.1 Flavonoid UFGT high pass
Osat01G0029230.1 Flavonoid UFGT high pass
Osat01G0032390.1 Flavonoid UFGT medium pass
Osat01G0032400.1 Flavonoid UFGT high pass
Osat01G0033170.1 Flavonoid UFGT high pass
Osat01G0035820.1 Flavonoid UFGT high pass
Osat01G0035840.1 Flavonoid UFGT medium pass
Osat01G0035840.2 Flavonoid UFGT high pass
Osat01G0035860.1 Flavonoid UFGT medium pass
Osat01G0035870.1 Flavonoid UFGT high pass
Osat01G0035880.1 Flavonoid UFGT medium pass
Osat01G0035890.1 Flavonoid UFGT high pass
Osat01G0035900.1 Flavonoid UFGT medium pass
Osat01G0035930.1 Flavonoid UFGT medium pass
Osat01G0040770.1 Flavonoid UFGT medium pass
Osat01G0040780.1 Flavonoid UFGT medium pass
Osat01G0045140.1 Flavonoid UFGT high pass
Osat01G0045330.1 Flavonoid UFGT low borderline
Osat01G0045490.1 Flavonoid UFGT medium pass
Osat02G0007040.1 Flavonoid UFGT high pass
Osat02G0008280.1 Flavonoid UFGT medium pass
Osat02G0008480.1 Flavonoid UFGT high pass
Osat02G0008480.2 Flavonoid UFGT high pass
Osat02G0008490.1 Flavonoid UFGT high pass
Osat02G0008500.1 Flavonoid UFGT medium pass
Osat02G0008510.1 Flavonoid UFGT medium pass
Osat02G0008520.1 Flavonoid UFGT medium pass
Osat02G0008530.1 Flavonoid UFGT medium pass
Osat02G0010850.1 Flavonoid UFGT medium pass
Osat02G0010870.1 Flavonoid UFGT medium pass
Osat02G0010880.1 Flavonoid UFGT medium pass
Osat02G0010910.1 Flavonoid UFGT medium pass
Osat02G0010960.1 Flavonoid UFGT medium pass
Osat02G0018300.1 Flavonoid UFGT low borderline
Osat02G0019690.1 Flavonoid UFGT medium pass
Osat02G0025160.1 Flavonoid UFGT high pass
Osat02G0025180.1 Flavonoid UFGT medium pass
Osat02G0025190.1 Flavonoid UFGT medium pass
Osat02G0025890.1 Flavonoid UFGT high pass
Osat02G0029240.1 Flavonoid UFGT medium pass
Osat02G0037690.1 Flavonoid UFGT medium pass
Osat02G0037700.1 Flavonoid UFGT high pass