PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status
Osat01G0012720.1 Flavonoid CHS low borderline
Osat01G0026940.1 Flavonoid CHS medium pass
Osat03G0032170.1 Flavonoid CHS medium pass
Osat04G0000200.1 Flavonoid CHS medium pass
Osat04G0010610.1 Flavonoid CHS medium pass
Osat05G0008340.1 Flavonoid CHS medium pass
Osat05G0008350.1 Flavonoid CHS medium pass
Osat05G0008360.1 Flavonoid CHS medium pass
Osat05G0008390.1 Flavonoid CHS medium pass
Osat05G0025700.1 Flavonoid CHS medium pass
Osat07G0008530.1 Flavonoid CHS medium pass
Osat07G0011740.1 Flavonoid CHS medium pass
Osat07G0013820.1 Flavonoid CHS medium pass
Osat07G0018930.1 Flavonoid CHS medium pass
Osat07G0018950.1 Flavonoid CHS medium pass
Osat07G0020600.1 Flavonoid CHS medium pass
Osat07G0020640.1 Flavonoid CHS medium pass
Osat07G0020690.1 Flavonoid CHS medium pass
Osat10G0003700.1 Flavonoid CHS medium pass
Osat10G0004120.1 Flavonoid CHS medium pass
Osat10G0004570.1 Flavonoid CHS medium pass
Osat10G0004610.1 Flavonoid CHS medium pass
Osat10G0004620.1 Flavonoid CHS low borderline
Osat10G0004630.1 Flavonoid CHS medium pass
Osat10G0005140.1 Flavonoid CHS medium pass
Osat10G0017950.1 Flavonoid CHS medium pass
Osat10G0020080.1 Flavonoid CHS low borderline
Osat11G0019480.1 Flavonoid CHS medium pass
Osat11G0019490.1 Flavonoid CHS medium pass
Osat11G0019520.1 Flavonoid CHS medium pass
Osat11G0019540.1 Flavonoid CHS medium pass
Osat11G0019550.1 Flavonoid CHS medium pass
Osat11G0019580.1 Flavonoid CHS medium pass
Osat11G0021630.1 Flavonoid CHS medium pass
Osat12G0005550.1 Flavonoid CHS medium pass