PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status
Osat01G0016710.1 Phenylpropanoid CAD low borderline
Osat01G0022180.1 Phenylpropanoid CAD medium borderline
Osat01G0022180.2 Phenylpropanoid CAD medium borderline
Osat01G0022180.3 Phenylpropanoid CAD medium borderline
Osat02G0007020.1 Phenylpropanoid CAD medium pass
Osat02G0017730.1 Phenylpropanoid CAD low borderline
Osat02G0024620.1 Phenylpropanoid CAD low borderline
Osat02G0024620.2 Phenylpropanoid CAD low borderline
Osat02G0024620.3 Phenylpropanoid CAD low borderline
Osat02G0024620.4 Phenylpropanoid CAD low borderline
Osat02G0024670.1 Phenylpropanoid CAD low borderline
Osat02G0024670.2 Phenylpropanoid CAD low borderline
Osat03G0006600.1 Phenylpropanoid CAD low borderline
Osat03G0009440.1 Phenylpropanoid CAD medium pass
Osat03G0018240.1 Phenylpropanoid CAD low borderline
Osat03G0018250.1 Phenylpropanoid CAD low borderline
Osat03G0019190.1 Phenylpropanoid CAD medium pass
Osat03G0019210.1 Phenylpropanoid CAD medium pass
Osat03G0019260.1 Phenylpropanoid CAD medium pass
Osat03G0023720.1 Phenylpropanoid CAD low borderline
Osat03G0042970.1 Phenylpropanoid CAD medium borderline
Osat04G0000500.1 Phenylpropanoid CAD medium pass
Osat04G0004320.1 Phenylpropanoid CAD low borderline
Osat04G0007070.1 Phenylpropanoid CAD medium pass
Osat04G0012320.1 Phenylpropanoid CAD low borderline
Osat04G0012330.1 Phenylpropanoid CAD low borderline
Osat04G0012380.1 Phenylpropanoid CAD low borderline
Osat04G0012430.1 Phenylpropanoid CAD low borderline
Osat04G0012430.2 Phenylpropanoid CAD medium pass
Osat04G0012430.3 Phenylpropanoid CAD medium pass
Osat04G0012480.1 Phenylpropanoid CAD low borderline
Osat04G0012500.1 Phenylpropanoid CAD low borderline
Osat04G0012630.1 Phenylpropanoid CAD low borderline
Osat04G0012650.1 Phenylpropanoid CAD low borderline
Osat04G0012690.1 Phenylpropanoid CAD low borderline
Osat04G0013450.1 Phenylpropanoid CAD low borderline
Osat04G0013500.1 Phenylpropanoid CAD low borderline
Osat04G0031150.1 Phenylpropanoid CAD low borderline
Osat04G0031180.1 Phenylpropanoid CAD low borderline
Osat04G0031220.1 Phenylpropanoid CAD medium pass
Osat04G0032640.1 Phenylpropanoid CAD medium borderline
Osat04G0032640.2 Phenylpropanoid CAD medium borderline
Osat04G0032650.1 Phenylpropanoid CAD medium borderline
Osat04G0032660.1 Phenylpropanoid CAD medium borderline
Osat04G0032670.1 Phenylpropanoid CAD medium borderline
Osat04G0032690.1 Phenylpropanoid CAD medium borderline
Osat04G0032700.1 Phenylpropanoid CAD medium borderline
Osat04G0032710.1 Phenylpropanoid CAD medium borderline
Osat05G0001190.1 Phenylpropanoid CAD low borderline
Osat05G0011010.1 Phenylpropanoid CAD low borderline