PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status
Osat01G0013640.1 Alkaloid BBE low borderline
Osat01G0027890.1 Alkaloid BBE low borderline
Osat02G0010600.1 Alkaloid BBE medium borderline
Osat02G0036170.1 Alkaloid BBE low borderline
Osat05G0012260.1 Alkaloid BBE low borderline
Osat05G0015880.1 Alkaloid BBE low borderline
Osat05G0030490.1 Alkaloid BBE low borderline
Osat05G0030520.1 Alkaloid BBE low borderline
Osat06G0022430.1 Alkaloid BBE medium borderline
Osat06G0022460.1 Alkaloid BBE medium borderline
Osat06G0022480.1 Alkaloid BBE medium borderline
Osat06G0022490.1 Alkaloid BBE medium borderline
Osat06G0022500.1 Alkaloid BBE medium borderline
Osat06G0022530.1 Alkaloid BBE medium borderline
Osat08G0004120.1 Alkaloid BBE medium borderline
Osat08G0004130.1 Alkaloid BBE medium borderline
Osat08G0004140.1 Alkaloid BBE medium borderline
Osat08G0015000.1 Alkaloid BBE medium borderline
Osat10G0009950.1 Alkaloid BBE low borderline
Osat11G0018000.1 Alkaloid BBE medium borderline