PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
Osat01G0007470.2 Steroid CYP90D1 medium borderline
Osat01G0019840.1 Steroid CYP90D1 low borderline
Osat01G0052550.1 Steroid CYP90D1 low borderline
Osat02G0013270.1 Steroid CYP90D1 low borderline
Osat02G0018250.1 Steroid CYP90D1 low borderline
Osat02G0018290.1 Steroid CYP90D1 low borderline
Osat02G0026900.1 Steroid CYP90D1 low borderline
Osat03G0001060.1 Steroid CYP90D1 low borderline
Osat03G0011370.1 Steroid CYP90D1 low borderline
Osat03G0017150.1 Steroid CYP90D1 low borderline
Osat03G0027790.1 Steroid CYP90D1 medium borderline
Osat03G0045370.1 Steroid CYP90D1 low borderline
Osat04G0001650.1 Steroid CYP90D1 low borderline
Osat04G0001670.1 Steroid CYP90D1 low borderline
Osat04G0020950.1 Steroid CYP90D1 medium borderline
Osat04G0028120.1 Steroid CYP90D1 medium borderline
Osat04G0028160.2 Steroid CYP90D1 medium borderline
Osat05G0019440.1 Steroid CYP90D1 low borderline
Osat07G0002830.1 Steroid CYP90D1 medium borderline
Osat07G0014320.1 Steroid CYP90D1 low borderline
Osat07G0020140.1 Steroid CYP90D1 medium borderline
Osat07G0020210.1 Steroid CYP90D1 medium borderline
Osat07G0020220.1 Steroid CYP90D1 medium pass
Osat07G0020240.1 Steroid CYP90D1 low borderline
Osat07G0020240.2 Steroid CYP90D1 medium pass
Osat07G0020250.1 Steroid CYP90D1 medium borderline
Osat07G0026330.1 Steroid CYP90D1 low borderline
Osat07G0029660.1 Steroid CYP90D1 low borderline
Osat07G0032050.1 Steroid CYP90D1 low borderline
Osat08G0020160.1 Steroid CYP90D1 low borderline
Osat09G0003620.1 Steroid CYP90D1 low borderline
Osat09G0011040.1 Steroid CYP90D1 low borderline
Osat09G0021080.1 Steroid CYP90D1 low borderline
Osat10G0001310.1 Steroid CYP90D1 low borderline
Osat10G0004810.1 Steroid CYP90D1 low borderline
Osat10G0009140.1 Steroid CYP90D1 low borderline
Osat11G0003170.1 Steroid CYP90D1 medium borderline
Osat12G0001430.1 Steroid CYP90D1 low borderline
Osat12G0002940.1 Steroid CYP90D1 medium borderline