PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Osat01G0006470.1 Alkaloid T3O medium pass
Osat01G0006480.1 Alkaloid T3O medium pass
Osat01G0007470.1 Alkaloid T3O medium pass
Osat01G0007470.2 Alkaloid T3O medium pass
Osat01G0008500.1 Alkaloid T3O medium pass
Osat01G0008510.1 Alkaloid T3O medium pass
Osat01G0008520.1 Alkaloid T3O medium pass
Osat01G0008530.1 Alkaloid T3O medium pass
Osat01G0009720.1 Alkaloid T3O medium borderline
Osat01G0009740.1 Alkaloid T3O medium borderline
Osat01G0019260.1 Alkaloid T3O medium borderline
Osat01G0023060.1 Alkaloid T3O medium borderline
Osat01G0033400.1 Alkaloid T3O medium borderline
Osat01G0040620.1 Alkaloid T3O low borderline
Osat01G0040630.1 Alkaloid T3O medium pass
Osat01G0040640.1 Alkaloid T3O low borderline
Osat01G0040660.1 Alkaloid T3O low borderline
Osat01G0040670.1 Alkaloid T3O low borderline
Osat01G0040690.1 Alkaloid T3O low borderline
Osat01G0040720.1 Alkaloid T3O medium pass
Osat01G0044360.1 Alkaloid T3O low borderline
Osat01G0044620.1 Alkaloid T3O medium pass
Osat01G0044620.2 Alkaloid T3O medium pass
Osat01G0051370.1 Alkaloid T3O low borderline
Osat01G0051380.1 Alkaloid T3O low borderline
Osat01G0051800.1 Alkaloid T3O low borderline
Osat01G0051810.1 Alkaloid T3O medium borderline
Osat01G0051820.1 Alkaloid T3O medium borderline
Osat02G0000840.1 Alkaloid T3O low borderline
Osat02G0006750.1 Alkaloid T3O medium borderline
Osat02G0006770.1 Alkaloid T3O medium borderline
Osat02G0006790.1 Alkaloid T3O medium borderline
Osat02G0006800.1 Alkaloid T3O medium borderline
Osat02G0006840.1 Alkaloid T3O medium borderline
Osat02G0006860.1 Alkaloid T3O medium borderline
Osat02G0006870.1 Alkaloid T3O medium borderline
Osat02G0006920.1 Alkaloid T3O medium borderline
Osat02G0006930.1 Alkaloid T3O medium borderline
Osat02G0006940.1 Alkaloid T3O medium borderline
Osat02G0009280.1 Alkaloid T3O medium borderline
Osat02G0009290.1 Alkaloid T3O medium borderline
Osat02G0020240.1 Alkaloid T3O medium borderline
Osat02G0020340.1 Alkaloid T3O medium borderline
Osat02G0020410.1 Alkaloid T3O medium borderline
Osat02G0020420.1 Alkaloid T3O medium borderline
Osat02G0020430.1 Alkaloid T3O medium borderline
Osat02G0020440.1 Alkaloid T3O medium borderline
Osat02G0022140.1 Alkaloid T3O medium borderline
Osat02G0024550.1 Alkaloid T3O medium borderline
Osat02G0024570.1 Alkaloid T3O medium borderline