PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status
Osat01G0019130.1 Phenylpropanoid LAC medium pass
Osat01G0028980.1 Phenylpropanoid LAC medium pass
Osat01G0041610.1 Phenylpropanoid LAC low borderline
Osat01G0042360.1 Phenylpropanoid LAC medium pass
Osat01G0043500.1 Phenylpropanoid LAC medium pass
Osat01G0043510.1 Phenylpropanoid LAC medium pass
Osat01G0043610.1 Phenylpropanoid LAC medium pass
Osat01G0044070.1 Phenylpropanoid LAC medium pass
Osat01G0044080.1 Phenylpropanoid LAC medium pass
Osat01G0044080.2 Phenylpropanoid LAC low borderline
Osat01G0044090.1 Phenylpropanoid LAC medium pass
Osat02G0037280.1 Phenylpropanoid LAC medium pass
Osat03G0013000.1 Phenylpropanoid LAC medium pass
Osat03G0014840.1 Phenylpropanoid LAC medium pass
Osat04G0027540.1 Phenylpropanoid LAC low borderline
Osat05G0022970.1 Phenylpropanoid LAC medium pass
Osat05G0022990.1 Phenylpropanoid LAC medium pass
Osat05G0023000.1 Phenylpropanoid LAC medium pass
Osat06G0000320.1 Phenylpropanoid LAC low borderline
Osat06G0023490.1 Phenylpropanoid LAC medium pass
Osat06G0023510.1 Phenylpropanoid LAC low borderline
Osat07G0000090.1 Phenylpropanoid LAC medium pass
Osat07G0001520.1 Phenylpropanoid LAC low borderline
Osat08G0003860.1 Phenylpropanoid LAC low borderline
Osat09G0010010.1 Phenylpropanoid LAC medium pass
Osat09G0019560.1 Phenylpropanoid LAC medium pass
Osat10G0008860.1 Phenylpropanoid LAC medium pass
Osat10G0014760.1 Phenylpropanoid LAC low borderline
Osat10G0014980.1 Phenylpropanoid LAC medium pass
Osat10G0014990.1 Phenylpropanoid LAC medium pass
Osat11G0000600.1 Phenylpropanoid LAC medium pass
Osat11G0011260.1 Phenylpropanoid LAC medium pass
Osat11G0026220.1 Phenylpropanoid LAC medium pass
Osat11G0026240.1 Phenylpropanoid LAC medium pass
Osat11G0029410.1 Phenylpropanoid LAC medium pass
Osat11G0030090.1 Phenylpropanoid LAC medium pass
Osat12G0000600.1 Phenylpropanoid LAC medium pass
Osat12G0010270.1 Phenylpropanoid LAC medium pass
Osat12G0010340.1 Phenylpropanoid LAC medium pass
Osat12G0010370.1 Phenylpropanoid LAC medium pass