PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Osat01G0035840.1 Alkaloid 7DLGT medium pass
Osat01G0035840.2 Alkaloid 7DLGT medium pass
Osat01G0035860.1 Alkaloid 7DLGT low borderline
Osat01G0035870.1 Alkaloid 7DLGT medium pass
Osat01G0035880.1 Alkaloid 7DLGT medium pass
Osat01G0035890.1 Alkaloid 7DLGT medium pass
Osat01G0035900.1 Alkaloid 7DLGT medium pass
Osat01G0035930.1 Alkaloid 7DLGT medium pass
Osat01G0040770.1 Alkaloid 7DLGT low borderline
Osat01G0040780.1 Alkaloid 7DLGT low borderline
Osat01G0045140.1 Alkaloid 7DLGT low borderline
Osat01G0045490.1 Alkaloid 7DLGT low borderline
Osat02G0007040.1 Alkaloid 7DLGT low borderline
Osat02G0008280.1 Alkaloid 7DLGT low borderline
Osat02G0008480.1 Alkaloid 7DLGT low borderline
Osat02G0008480.2 Alkaloid 7DLGT low borderline
Osat02G0008490.1 Alkaloid 7DLGT low borderline
Osat02G0008500.1 Alkaloid 7DLGT low borderline
Osat02G0008510.1 Alkaloid 7DLGT low borderline
Osat02G0008520.1 Alkaloid 7DLGT low borderline
Osat02G0008530.1 Alkaloid 7DLGT low borderline
Osat02G0010850.1 Alkaloid 7DLGT medium pass
Osat02G0010870.1 Alkaloid 7DLGT medium pass
Osat02G0010880.1 Alkaloid 7DLGT medium pass
Osat02G0010910.1 Alkaloid 7DLGT medium pass
Osat02G0010960.1 Alkaloid 7DLGT low borderline
Osat02G0018200.1 Alkaloid 7DLGT medium pass
Osat02G0019690.1 Alkaloid 7DLGT medium pass
Osat02G0025160.1 Alkaloid 7DLGT high pass
Osat02G0025180.1 Alkaloid 7DLGT medium pass
Osat02G0025190.1 Alkaloid 7DLGT medium pass
Osat02G0025890.1 Alkaloid 7DLGT low borderline
Osat02G0029240.1 Alkaloid 7DLGT low borderline
Osat02G0037690.1 Alkaloid 7DLGT medium pass
Osat02G0037700.1 Alkaloid 7DLGT medium pass
Osat02G0037720.1 Alkaloid 7DLGT medium pass
Osat02G0041210.1 Alkaloid 7DLGT low borderline
Osat03G0008640.1 Alkaloid 7DLGT low borderline
Osat03G0019000.1 Alkaloid 7DLGT medium pass
Osat03G0031720.1 Alkaloid 7DLGT medium pass
Osat03G0033650.1 Alkaloid 7DLGT low borderline
Osat03G0034280.1 Alkaloid 7DLGT low borderline
Osat03G0034290.1 Alkaloid 7DLGT low borderline
Osat03G0037340.1 Alkaloid 7DLGT low borderline
Osat03G0038270.1 Alkaloid 7DLGT low borderline
Osat03G0038290.1 Alkaloid 7DLGT low borderline
Osat03G0038300.1 Alkaloid 7DLGT low borderline
Osat03G0038300.2 Alkaloid 7DLGT low borderline
Osat03G0038320.1 Alkaloid 7DLGT medium pass
Osat03G0038330.1 Alkaloid 7DLGT medium pass