PlantSME Plant secondary metabolism enzyme database
PAL

PAL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family PAL.

Lineage Coverage
Detected in 752 of 789 public species; click a lineage to inspect its species list.
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 7015 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
Flavonoid scaffold formation
Flavone and isoflavonoid branches
Anthocyanin and proanthocyanidin branches
Phenylpropanoid pathway 7015 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Rosmarinic acid pathway 7015 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
Tyrosine acceptor branch
Condensation and hydroxylation
Family Gene List
GeneSpeciesProtein ID
BceiScaffold1400085690 bombax_ceiba BceiScaffold1400085690
BceiScaffold1400085700 bombax_ceiba BceiScaffold1400085700
BceiScaffold1400085730 bombax_ceiba BceiScaffold1400085730
BceiScaffold1470100970 bombax_ceiba BceiScaffold1470100970
BceiScaffold1530105670 bombax_ceiba BceiScaffold1530105670
BceiScaffold1810142650 bombax_ceiba BceiScaffold1810142650
BceiScaffold360311210 bombax_ceiba BceiScaffold360311210
BceiScaffold360311220 bombax_ceiba BceiScaffold360311220
BceiScaffold4230358390 bombax_ceiba BceiScaffold4230358390
BceiScaffold4230358400 bombax_ceiba BceiScaffold4230358400
BceiScaffold4230358420 bombax_ceiba BceiScaffold4230358420
BceiScaffold4290361150 bombax_ceiba BceiScaffold4290361150
BceiScaffold5000399710 bombax_ceiba BceiScaffold5000399710
BceiScaffold5000399720 bombax_ceiba BceiScaffold5000399720
BceiScaffold740478630 bombax_ceiba BceiScaffold740478630
BOampC108557190004750 bonia_amplexicaulis BOampC108557190004750
BOampscaffold10960039010 bonia_amplexicaulis BOampscaffold10960039010
BOampscaffold10960039020 bonia_amplexicaulis BOampscaffold10960039020
BOampscaffold150090820 bonia_amplexicaulis BOampscaffold150090820
BOampscaffold150090830 bonia_amplexicaulis BOampscaffold150090830
BOampscaffold150090840 bonia_amplexicaulis BOampscaffold150090840
BOampscaffold1610107950 bonia_amplexicaulis BOampscaffold1610107950
BOampscaffold1610107960 bonia_amplexicaulis BOampscaffold1610107960
BOampscaffold280223890 bonia_amplexicaulis BOampscaffold280223890
BOampscaffold280223900 bonia_amplexicaulis BOampscaffold280223900
BOampscaffold310248490 bonia_amplexicaulis BOampscaffold310248490
BOampscaffold310248500 bonia_amplexicaulis BOampscaffold310248500
BOampscaffold4360318720 bonia_amplexicaulis BOampscaffold4360318720
BOampscaffold5380376450 bonia_amplexicaulis BOampscaffold5380376450
BOampscaffold5380376460 bonia_amplexicaulis BOampscaffold5380376460