PlantSME Plant secondary metabolism enzyme database
TDC

TDC

Atlas summary family TDC.

Lineage Coverage
Detected in 29 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Miscanthus lutarioriparius
Chrysanthemum seticuspe
Zoysia matrella
Aegilops tauschii
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 33 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
Btri701210226680 bazzania_tridens Btri701210226680
Bfucscaffold1700_cov1560117960 begonia_fuchsioides Bfucscaffold1700_cov1560117960
Bfucscaffold1981_cov1760144090 begonia_fuchsioides Bfucscaffold1981_cov1760144090
Bfucscaffold2529_cov1470204490 begonia_fuchsioides Bfucscaffold2529_cov1470204490
Bfucscaffold347_cov1400280100 begonia_fuchsioides Bfucscaffold347_cov1400280100
Bfucscaffold347_cov1400280110 begonia_fuchsioides Bfucscaffold347_cov1400280110
Bfucscaffold511_cov1190363740 begonia_fuchsioides Bfucscaffold511_cov1190363740
Bfucscaffold781_cov1310434590 begonia_fuchsioides Bfucscaffold781_cov1310434590
Bfucscaffold91462_cov1070487190 begonia_fuchsioides Bfucscaffold91462_cov1070487190
Bhis05G0001100.1 benincasa_hispida Bhis05G0001100.1
Bpatpat_scaffold28640157670.1 beta_patula Bpatpat_scaffold28640157670.1
Bpatpat_scaffold6160233910.1 beta_patula Bpatpat_scaffold6160233910.1
BEvul07G0019360.1 beta_vulgaris BEvul07G0019360.1
BEvul08G0022130.1 beta_vulgaris BEvul08G0022130.1
BpenContig00000260.1 betula_pendula BpenContig00000260.1
BpenContig4690190380.1 betula_pendula BpenContig4690190380.1
Bpusscaffold_120023710 blasia_pusilla Bpusscaffold_120023710
Bpusscaffold_120024380 blasia_pusilla Bpusscaffold_120024380
Bpusscaffold_40106260 blasia_pusilla Bpusscaffold_40106260
Boea_hygrometrica_lcl|KV014884.1_cds_KZV21509.1_37346 boea_hygrometrica Boea_hygrometrica_lcl|KV014884.1_cds_KZV21509.1_37346
BOERETT00006247 boechera_retrofracta BOERETT00006247
BOERETT00027952 boechera_retrofracta BOERETT00027952
BceiScaffold1030010800 bombax_ceiba BceiScaffold1030010800
BceiScaffold22000186350 bombax_ceiba BceiScaffold22000186350
BceiScaffold26710255930 bombax_ceiba BceiScaffold26710255930
BceiScaffold2730258760 bombax_ceiba BceiScaffold2730258760
BceiScaffold30276640 bombax_ceiba BceiScaffold30276640
BOampscaffold1020026450 bonia_amplexicaulis BOampscaffold1020026450
BOampscaffold1020026460 bonia_amplexicaulis BOampscaffold1020026460
BOampscaffold290231810 bonia_amplexicaulis BOampscaffold290231810