PlantSME Plant secondary metabolism enzyme database
TDC

TDC

Atlas summary family TDC.

Lineage Coverage
Detected in 29 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Miscanthus lutarioriparius
Chrysanthemum seticuspe
Zoysia matrella
Aegilops tauschii
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 33 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
citrullus_lanatus_ClG42_01g0069400.10 citrullus_lanatus citrullus_lanatus_ClG42_01g0069400.10
citrullus_lanatus_ClG42_01g0086200.10 citrullus_lanatus citrullus_lanatus_ClG42_01g0086200.10
citrullus_lanatus_ClG42_01g0186200.10 citrullus_lanatus citrullus_lanatus_ClG42_01g0186200.10
citrullus_lanatus_ClG42_04g0133500.10 citrullus_lanatus citrullus_lanatus_ClG42_04g0133500.10
citrullus_lanatus_ClG42_06g0020700.10 citrullus_lanatus citrullus_lanatus_ClG42_06g0020700.10
citrus_australis_GWHPBQDX005279 citrus_australis citrus_australis_GWHPBQDX005279
citrus_australis_GWHPBQDX012079 citrus_australis citrus_australis_GWHPBQDX012079
citrus_australis_GWHPBQDX016150 citrus_australis citrus_australis_GWHPBQDX016150
citrus_australis_GWHPBQDX018528 citrus_australis citrus_australis_GWHPBQDX018528
citrus_australis_GWHPBQDX023117 citrus_australis citrus_australis_GWHPBQDX023117
Cclescaffold_10008720.1 citrus_clementina Cclescaffold_10008720.1
Cclescaffold_20043980.1 citrus_clementina Cclescaffold_20043980.1
Cclescaffold_30072830.1 citrus_clementina Cclescaffold_30072830.1
Cclescaffold_40120580.1 citrus_clementina Cclescaffold_40120580.1
Cclescaffold_40120580.2 citrus_clementina Cclescaffold_40120580.2
CIgra02G0028560.1 citrus_grandis CIgra02G0028560.1
CIgra04G0014950.1 citrus_grandis CIgra04G0014950.1
CIgra05G0030670.1 citrus_grandis CIgra05G0030670.1
CIgra07G0016730.1 citrus_grandis CIgra07G0016730.1
CIgra07G0016730.2 citrus_grandis CIgra07G0016730.2
CIgra08G0017180.1 citrus_grandis CIgra08G0017180.1
Cichscaffold_180072740.1 citrus_ichangensis Cichscaffold_180072740.1
Cichscaffold_2410120690.1 citrus_ichangensis Cichscaffold_2410120690.1
Cichscaffold_3090155130.1 citrus_ichangensis Cichscaffold_3090155130.1
Cichscaffold_32_30164380.1 citrus_ichangensis Cichscaffold_32_30164380.1
citrus_limon_GWHPCBFQ008169.1 citrus_limon citrus_limon_GWHPCBFQ008169.1
citrus_limon_GWHPCBFQ011165.1 citrus_limon citrus_limon_GWHPCBFQ011165.1
citrus_limon_GWHPCBFQ022067.1 citrus_limon citrus_limon_GWHPCBFQ022067.1
citrus_limon_GWHPCBFQ025262.1 citrus_limon citrus_limon_GWHPCBFQ025262.1
citrus_limon_GWHPCBFQ029920.1 citrus_limon citrus_limon_GWHPCBFQ029920.1