PlantSME Plant secondary metabolism enzyme database
TDC

TDC

Atlas summary family TDC.

Lineage Coverage
Detected in 29 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Miscanthus lutarioriparius
Chrysanthemum seticuspe
Zoysia matrella
Aegilops tauschii
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 33 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
citrus_limon_GWHPCBFQ035211.1 citrus_limon citrus_limon_GWHPCBFQ035211.1
citrus_limon_GWHPCBFQ044484.1 citrus_limon citrus_limon_GWHPCBFQ044484.1
citrus_limon_GWHPCBFQ047621.1 citrus_limon citrus_limon_GWHPCBFQ047621.1
Cmedscaffold_2110100810.1 citrus_medica Cmedscaffold_2110100810.1
Cmedscaffold_3020149410.1 citrus_medica Cmedscaffold_3020149410.1
Cmedscaffold_54_20242010.1 citrus_medica Cmedscaffold_54_20242010.1
Cmedscaffold_620259390.1 citrus_medica Cmedscaffold_620259390.1
Cretscaffold2339_cov960037670.1 citrus_reticulata Cretscaffold2339_cov960037670.1
Cretscaffold2339_cov960037670.2 citrus_reticulata Cretscaffold2339_cov960037670.2
Cretscaffold2964_cov920057240.1 citrus_reticulata Cretscaffold2964_cov920057240.1
Cretscaffold514_cov870103890.1 citrus_reticulata Cretscaffold514_cov870103890.1
Cretscaffold85905_cov920149890.1 citrus_reticulata Cretscaffold85905_cov920149890.1
Cretscaffold94_cov720286940.1 citrus_reticulata Cretscaffold94_cov720286940.1
Csinscaffold000030016610.1 citrus_sinensis Csinscaffold000030016610.1
Csinscaffold000030016610.2 citrus_sinensis Csinscaffold000030016610.2
Csinscaffold000690122690.1 citrus_sinensis Csinscaffold000690122690.1
Csinscaffold005830204200.1 citrus_sinensis Csinscaffold005830204200.1
Csinscaffold005830204200.2 citrus_sinensis Csinscaffold005830204200.2
Csinscaffold005830204200.3 citrus_sinensis Csinscaffold005830204200.3
Csinscaffold005830204200.4 citrus_sinensis Csinscaffold005830204200.4
Csinscaffold008200212350.1 citrus_sinensis Csinscaffold008200212350.1
CLchi08G0011610.1 cladopus_chinensis CLchi08G0011610.1
CLchi08G0011850.1 cladopus_chinensis CLchi08G0011850.1
CLchi14G0003080.1 cladopus_chinensis CLchi14G0003080.1
CsonA2G0033860.1 cleistogenes_songorica CsonA2G0033860.1
CsonA4G0010360.1 cleistogenes_songorica CsonA4G0010360.1
CsonA4G0028530.1 cleistogenes_songorica CsonA4G0028530.1
CsonA5G0007810.1 cleistogenes_songorica CsonA5G0007810.1
CsonA5G0015990.1 cleistogenes_songorica CsonA5G0015990.1
CsonA6G0013270.1 cleistogenes_songorica CsonA6G0013270.1