PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Cretscaffold1027_cov900003510.1 Alkaloid 16OMT medium borderline
Cretscaffold1027_cov900003560.1 Alkaloid 16OMT medium borderline
Cretscaffold1300_cov570013340.1 Alkaloid 16OMT medium borderline
Cretscaffold132_cov940018640.1 Alkaloid 16OMT medium borderline
Cretscaffold132_cov940018650.1 Alkaloid 16OMT medium borderline
Cretscaffold2339_cov960038020.1 Alkaloid 16OMT medium borderline
Cretscaffold276_cov890043820.1 Alkaloid 16OMT medium borderline
Cretscaffold276_cov890047140.1 Alkaloid 16OMT medium borderline
Cretscaffold276_cov890047160.1 Alkaloid 16OMT medium borderline
Cretscaffold294_cov920052590.1 Alkaloid 16OMT medium borderline
Cretscaffold30593_cov580059270.1 Alkaloid 16OMT medium borderline
Cretscaffold3805_cov820066730.1 Alkaloid 16OMT medium borderline
Cretscaffold3805_cov820066740.1 Alkaloid 16OMT medium borderline
Cretscaffold3805_cov820066750.1 Alkaloid 16OMT medium borderline
Cretscaffold3805_cov820066760.1 Alkaloid 16OMT medium borderline
Cretscaffold3805_cov820066760.2 Alkaloid 16OMT medium borderline
Cretscaffold3805_cov820066780.1 Alkaloid 16OMT medium borderline
Cretscaffold3805_cov820066800.1 Alkaloid 16OMT medium borderline
Cretscaffold39_cov910073420.1 Alkaloid 16OMT medium borderline
Cretscaffold4070_cov900076770.1 Alkaloid 16OMT medium borderline
Cretscaffold435_cov920087470.1 Alkaloid 16OMT medium borderline
Cretscaffold440_cov850089690.1 Alkaloid 16OMT medium borderline
Cretscaffold521_cov930105480.1 Alkaloid 16OMT medium borderline
Cretscaffold535_cov910107830.4 Alkaloid 16OMT low borderline
Cretscaffold535_cov910108010.1 Alkaloid 16OMT medium borderline
Cretscaffold535_cov910108020.1 Alkaloid 16OMT medium borderline
Cretscaffold535_cov910108020.2 Alkaloid 16OMT medium borderline
Cretscaffold5933_cov910112150.1 Alkaloid 16OMT medium borderline
Cretscaffold61858_cov610114600.1 Alkaloid 16OMT medium borderline
Cretscaffold70358_cov880118430.1 Alkaloid 16OMT medium borderline
Cretscaffold780_cov840120700.1 Alkaloid 16OMT medium borderline
Cretscaffold81565_cov910123350.1 Alkaloid 16OMT medium borderline
Cretscaffold82373_cov750125120.1 Alkaloid 16OMT medium borderline
Cretscaffold85717_cov690136200.1 Alkaloid 16OMT medium borderline
Cretscaffold85758_cov930136360.1 Alkaloid 16OMT medium borderline
Cretscaffold85909_cov900154950.1 Alkaloid 16OMT medium borderline
Cretscaffold85913_cov830161740.1 Alkaloid 16OMT medium borderline
Cretscaffold85913_cov830161750.1 Alkaloid 16OMT medium borderline
Cretscaffold85917_cov880164460.1 Alkaloid 16OMT medium borderline
Cretscaffold85917_cov880164500.1 Alkaloid 16OMT medium borderline
Cretscaffold85918_cov900169490.1 Alkaloid 16OMT medium borderline
Cretscaffold85918_cov900169500.1 Alkaloid 16OMT medium borderline
Cretscaffold85956_cov860204300.1 Alkaloid 16OMT medium borderline
Cretscaffold85974_cov870215250.1 Alkaloid 16OMT low borderline
Cretscaffold85974_cov870215400.1 Alkaloid 16OMT medium borderline
Cretscaffold86021_cov880226940.1 Alkaloid 16OMT medium borderline
Cretscaffold86027_cov910235880.1 Alkaloid 16OMT medium borderline
Cretscaffold86027_cov910235890.1 Alkaloid 16OMT medium borderline
Cretscaffold86041_cov890247160.1 Alkaloid 16OMT medium borderline
Cretscaffold86041_cov890247160.2 Alkaloid 16OMT medium borderline