PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.11% Alkaloid pathway 25.38% Phenylpropanoid pathway 19.85% Flavonoid pathway 9.99% Rosmarinic acid pathway 9.66% Steroid pathway 7.02%
Family Distribution
C4H 5.91% BAHD 5.74% C3'H/CYP98A 5.67% CYP76 4.22% IFS 3.98% NMT 3.68% 4CL 3.58% T3O 3.39%
Other Families 63.84%
More Families (96)
UGT 195 3.37% POD 171 2.96% 7DLGT 168 2.9% UFGT 167 2.89% F3H 158 2.73% DWF4/CYP90B1 149 2.58% BR6OX2/CYP85A2 114 1.97% COMT 113 1.95% TPS 106 1.83% GES 104 1.8% CODM/T6ODM 103 1.78% STR 101 1.75% CAS 99 1.71% F3'H/CYP75B 98 1.69% CAD 87 1.5% CYP71 82 1.42% HCT 72 1.24% RAS 64 1.11% BBE 61 1.05% IFR 61 1.05% SMT1/SMT2/SMT3 60 1.04% TRI/TRII 59 1.02% G8O/G8H 58 1.0% 16OMT 56 0.97% CYP90D1 56 0.97% H6H 54 0.93% T16H 47 0.81% SGD 45 0.78% TAT 45 0.78% GS 39 0.67% CSE 39 0.67% PYKS 38 0.66% F3'5'H/CYP75A 38 0.66% IO 37 0.64% COR 33 0.57% PMT 32 0.55% LAC 31 0.54% GGPPS 31 0.54% ISY 29 0.5% CCR 29 0.5% ANR 28 0.48% FNS 28 0.48% 7DLH 27 0.47% LAMT 26 0.45% F5H/CYP84A 26 0.45% CPD/CYP90A1 25 0.43% NCS 23 0.4% 8HGO 18 0.31% CYP51G1 18 0.31% SLS 17 0.29% CHS 17 0.29% DFR 17 0.29% CCoAOMT 17 0.29% CNMT 16 0.28% SQE 16 0.28% MPO 15 0.26% PAL 15 0.26% AACT 14 0.24% CPR 13 0.22% ANS/LDOX 11 0.19% CHI 11 0.19% TYDC_DDC 10 0.17% CYP80B1 10 0.17% SQS/FDFT1 10 0.17% CYP719 9 0.16% BR6OX1/CYP85A1 9 0.16% HPPR 8 0.14% FPPS 8 0.14% MVK 8 0.14% TDC 6 0.1% XMT_MXMT_DXMT 6 0.1% HYD1 6 0.1% ROT3/CYP90C1 6 0.1% DXR 6 0.1% ODC 5 0.09% FLS 5 0.09% DXS 5 0.09% MCT/IspD 5 0.09% SMO1/SMO2 4 0.07% FK 4 0.07% MVD 4 0.07% ADC 3 0.05% DWF7 3 0.05% DET2 3 0.05% CMK/IspE 3 0.05% HDS/IspG 3 0.05% HMGS 3 0.05% HDR/IspH 3 0.05% 6OMT_4OMT_SOMT 2 0.03% CPI1 2 0.03% PMK 2 0.03% HMGR 2 0.03% DWF1 1 0.02% DWF5 1 0.02% MDS/IspF 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
Cretscaffold1027_cov900003580.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Cretscaffold132_cov940017410.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Cretscaffold172_cov840025550.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Cretscaffold172_cov840025590.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Cretscaffold181_cov890026980.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Cretscaffold499_cov790097600.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Cretscaffold499_cov790097620.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Cretscaffold85918_cov900166820.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Cretscaffold85956_cov860202990.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Cretscaffold86048_cov930259390.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO