PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FNS
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Gene Pathway Family Confidence Status
Cretscaffold1057_cov730004830.1 Flavonoid FNS medium borderline
Cretscaffold1080_cov610005150.1 Flavonoid FNS medium borderline
Cretscaffold1831_cov860028590.1 Flavonoid FNS medium borderline
Cretscaffold1831_cov860028600.1 Flavonoid FNS medium borderline
Cretscaffold273_cov940040320.1 Flavonoid FNS medium borderline
Cretscaffold3314_cov730061280.1 Flavonoid FNS medium borderline
Cretscaffold43322_cov1250087260.1 Flavonoid FNS medium borderline
Cretscaffold47506_cov1170092300.1 Flavonoid FNS medium borderline
Cretscaffold497_cov940096000.1 Flavonoid FNS low borderline
Cretscaffold63921_cov980115830.1 Flavonoid FNS medium borderline
Cretscaffold70049_cov1240118360.1 Flavonoid FNS medium borderline
Cretscaffold83675_cov920131300.1 Flavonoid FNS low borderline
Cretscaffold83675_cov920131300.2 Flavonoid FNS low borderline
Cretscaffold85918_cov900166130.1 Flavonoid FNS medium borderline
Cretscaffold85925_cov910187940.1 Flavonoid FNS medium borderline
Cretscaffold85944_cov790200950.1 Flavonoid FNS medium borderline
Cretscaffold85959_cov710205170.1 Flavonoid FNS low borderline
Cretscaffold85959_cov710205170.2 Flavonoid FNS low borderline
Cretscaffold85959_cov710205170.3 Flavonoid FNS low borderline
Cretscaffold85959_cov710205170.4 Flavonoid FNS low borderline
Cretscaffold86001_cov870224340.1 Flavonoid FNS medium borderline
Cretscaffold86001_cov870224350.1 Flavonoid FNS medium borderline
Cretscaffold86027_cov910238380.1 Flavonoid FNS medium borderline
Cretscaffold86041_cov890246430.1 Flavonoid FNS medium borderline
Cretscaffold86063_cov860265960.1 Flavonoid FNS medium pass
Cretscaffold86063_cov860266060.1 Flavonoid FNS medium borderline
Cretscaffold86080_cov890272260.1 Flavonoid FNS medium borderline
Cretscaffold8841_cov910280970.1 Flavonoid FNS medium borderline