PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
Reset
Gene Pathway Family Confidence Status
Cretscaffold1027_cov900001610.1 Alkaloid T3O medium borderline
Cretscaffold1027_cov900002890.1 Alkaloid T3O low borderline
Cretscaffold1027_cov900003520.1 Alkaloid T3O medium borderline
Cretscaffold1057_cov730004850.1 Alkaloid T3O medium borderline
Cretscaffold11345_cov920008640.1 Alkaloid T3O medium pass
Cretscaffold11439_cov810010070.1 Alkaloid T3O medium pass
Cretscaffold11439_cov810010090.1 Alkaloid T3O medium pass
Cretscaffold12970_cov880013290.1 Alkaloid T3O medium borderline
Cretscaffold1382_cov810020070.1 Alkaloid T3O medium borderline
Cretscaffold1382_cov810020070.2 Alkaloid T3O medium borderline
Cretscaffold1382_cov810020070.3 Alkaloid T3O medium borderline
Cretscaffold14605_cov890020880.1 Alkaloid T3O medium borderline
Cretscaffold146_cov780021110.1 Alkaloid T3O medium borderline
Cretscaffold16060_cov730023690.1 Alkaloid T3O medium borderline
Cretscaffold16060_cov730023700.1 Alkaloid T3O medium borderline
Cretscaffold172_cov840025170.1 Alkaloid T3O medium pass
Cretscaffold1831_cov860028580.1 Alkaloid T3O medium borderline
Cretscaffold1831_cov860028600.1 Alkaloid T3O medium borderline
Cretscaffold1831_cov860028640.1 Alkaloid T3O medium borderline
Cretscaffold1831_cov860029500.1 Alkaloid T3O medium borderline
Cretscaffold22364_cov1060033990.1 Alkaloid T3O medium pass
Cretscaffold22_cov910036720.1 Alkaloid T3O medium borderline
Cretscaffold22_cov910036740.1 Alkaloid T3O medium borderline
Cretscaffold2388_cov920038260.1 Alkaloid T3O medium borderline
Cretscaffold2388_cov920038270.1 Alkaloid T3O medium borderline
Cretscaffold24672_cov790038710.1 Alkaloid T3O medium borderline
Cretscaffold25752_cov1080039210.1 Alkaloid T3O medium borderline
Cretscaffold27091_cov900040040.1 Alkaloid T3O medium borderline
Cretscaffold273_cov940041480.1 Alkaloid T3O medium borderline
Cretscaffold28014_cov930048000.1 Alkaloid T3O medium borderline
Cretscaffold294_cov920052600.1 Alkaloid T3O medium borderline
Cretscaffold2964_cov920055750.1 Alkaloid T3O medium borderline
Cretscaffold2964_cov920055760.1 Alkaloid T3O medium borderline
Cretscaffold2964_cov920055850.1 Alkaloid T3O medium pass
Cretscaffold2964_cov920056230.1 Alkaloid T3O medium borderline
Cretscaffold2964_cov920056800.1 Alkaloid T3O medium borderline
Cretscaffold2964_cov920057520.1 Alkaloid T3O medium borderline
Cretscaffold3182_cov750060230.1 Alkaloid T3O medium borderline
Cretscaffold3182_cov750060280.1 Alkaloid T3O medium borderline
Cretscaffold3182_cov750060290.1 Alkaloid T3O medium borderline
Cretscaffold3387_cov1090062240.1 Alkaloid T3O medium borderline
Cretscaffold3387_cov1090062250.1 Alkaloid T3O medium borderline
Cretscaffold3805_cov820065990.1 Alkaloid T3O medium borderline
Cretscaffold397_cov790068310.1 Alkaloid T3O medium borderline
Cretscaffold397_cov790068390.1 Alkaloid T3O medium borderline
Cretscaffold4070_cov900075230.1 Alkaloid T3O medium borderline
Cretscaffold4070_cov900075330.1 Alkaloid T3O medium borderline
Cretscaffold4070_cov900075340.1 Alkaloid T3O medium borderline
Cretscaffold4070_cov900076740.1 Alkaloid T3O medium borderline
Cretscaffold4070_cov900076750.1 Alkaloid T3O medium borderline