PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Cretscaffold1027_cov900000670.1 Flavonoid F3H low borderline
Cretscaffold1027_cov900002210.1 Flavonoid F3H medium borderline
Cretscaffold11345_cov920007100.1 Flavonoid F3H low borderline
Cretscaffold11965_cov1020011890.1 Flavonoid F3H medium borderline
Cretscaffold12334_cov460012700.1 Flavonoid F3H medium pass
Cretscaffold132_cov940016440.1 Flavonoid F3H medium borderline
Cretscaffold132_cov940016530.1 Flavonoid F3H low borderline
Cretscaffold1567_cov780022930.1 Flavonoid F3H low borderline
Cretscaffold16979_cov920024370.1 Flavonoid F3H medium borderline
Cretscaffold1831_cov860028780.1 Flavonoid F3H medium borderline
Cretscaffold1831_cov860029000.1 Flavonoid F3H medium borderline
Cretscaffold1831_cov860029000.2 Flavonoid F3H medium borderline
Cretscaffold2179_cov930033500.1 Flavonoid F3H medium borderline
Cretscaffold22_cov910035810.1 Flavonoid F3H medium borderline
Cretscaffold273_cov940041500.1 Flavonoid F3H medium borderline
Cretscaffold273_cov940041520.1 Flavonoid F3H medium borderline
Cretscaffold273_cov940041530.1 Flavonoid F3H medium borderline
Cretscaffold273_cov940041550.1 Flavonoid F3H low borderline
Cretscaffold273_cov940041560.1 Flavonoid F3H medium borderline
Cretscaffold27622_cov1020043640.1 Flavonoid F3H medium borderline
Cretscaffold27622_cov1020043640.2 Flavonoid F3H medium borderline
Cretscaffold276_cov890047770.1 Flavonoid F3H low borderline
Cretscaffold276_cov890047770.2 Flavonoid F3H low borderline
Cretscaffold276_cov890047770.3 Flavonoid F3H low borderline
Cretscaffold276_cov890047770.4 Flavonoid F3H low borderline
Cretscaffold29141_cov760049540.1 Flavonoid F3H medium borderline
Cretscaffold294_cov920050470.1 Flavonoid F3H medium borderline
Cretscaffold294_cov920050880.1 Flavonoid F3H medium borderline
Cretscaffold3368_cov910062040.1 Flavonoid F3H low borderline
Cretscaffold3368_cov910062050.1 Flavonoid F3H low borderline
Cretscaffold34108_cov890062440.1 Flavonoid F3H medium borderline
Cretscaffold39346_cov670067440.1 Flavonoid F3H medium pass
Cretscaffold39_cov910069530.1 Flavonoid F3H low borderline
Cretscaffold39_cov910069540.1 Flavonoid F3H low borderline
Cretscaffold39_cov910069570.1 Flavonoid F3H low borderline
Cretscaffold39_cov910069580.1 Flavonoid F3H low borderline
Cretscaffold39_cov910069590.1 Flavonoid F3H medium borderline
Cretscaffold39_cov910069600.1 Flavonoid F3H medium borderline
Cretscaffold39_cov910070160.1 Flavonoid F3H medium borderline
Cretscaffold39_cov910072370.1 Flavonoid F3H medium borderline
Cretscaffold4070_cov900077100.1 Flavonoid F3H medium borderline
Cretscaffold426_cov900078910.1 Flavonoid F3H medium borderline
Cretscaffold429_cov910081600.1 Flavonoid F3H low borderline
Cretscaffold429_cov910084770.1 Flavonoid F3H medium borderline
Cretscaffold429_cov910084770.2 Flavonoid F3H medium borderline
Cretscaffold429_cov910085560.1 Flavonoid F3H medium borderline
Cretscaffold429_cov910085830.1 Flavonoid F3H medium borderline
Cretscaffold429_cov910086300.1 Flavonoid F3H medium borderline
Cretscaffold43639_cov480087530.1 Flavonoid F3H medium borderline
Cretscaffold440_cov850088320.1 Flavonoid F3H medium borderline