PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Cretscaffold11468_cov470010520.1 Alkaloid IO medium pass
Cretscaffold14348_cov600020640.1 Alkaloid IO medium borderline
Cretscaffold18589_cov500029940.1 Alkaloid IO medium borderline
Cretscaffold273_cov940041860.2 Alkaloid IO low borderline
Cretscaffold273_cov940041860.5 Alkaloid IO low borderline
Cretscaffold273_cov940041860.6 Alkaloid IO low borderline
Cretscaffold273_cov940041860.8 Alkaloid IO low borderline
Cretscaffold276_cov890046410.1 Alkaloid IO medium borderline
Cretscaffold294_cov920050140.1 Alkaloid IO low borderline
Cretscaffold2964_cov920056910.1 Alkaloid IO medium borderline
Cretscaffold30974_cov1240059640.1 Alkaloid IO medium borderline
Cretscaffold480_cov830093220.1 Alkaloid IO medium borderline
Cretscaffold521_cov930105760.1 Alkaloid IO low borderline
Cretscaffold81138_cov1110122770.1 Alkaloid IO medium borderline
Cretscaffold85905_cov920147580.1 Alkaloid IO medium borderline
Cretscaffold85909_cov900155180.1 Alkaloid IO medium borderline
Cretscaffold85909_cov900155190.1 Alkaloid IO medium borderline
Cretscaffold85909_cov900155210.1 Alkaloid IO medium borderline
Cretscaffold85909_cov900159140.3 Alkaloid IO low borderline
Cretscaffold85909_cov900159140.5 Alkaloid IO low borderline
Cretscaffold85913_cov830162260.1 Alkaloid IO medium borderline
Cretscaffold85918_cov900166130.1 Alkaloid IO medium borderline
Cretscaffold85925_cov910187030.1 Alkaloid IO low borderline
Cretscaffold85925_cov910187030.2 Alkaloid IO low borderline
Cretscaffold85938_cov950197510.1 Alkaloid IO low borderline
Cretscaffold85969_cov760210800.2 Alkaloid IO low borderline
Cretscaffold86001_cov870224090.1 Alkaloid IO low borderline
Cretscaffold86021_cov880226170.1 Alkaloid IO medium borderline
Cretscaffold86027_cov910235530.1 Alkaloid IO medium borderline
Cretscaffold86027_cov910238420.1 Alkaloid IO medium borderline
Cretscaffold86030_cov920239630.1 Alkaloid IO medium borderline
Cretscaffold86040_cov830244850.1 Alkaloid IO medium borderline
Cretscaffold86063_cov860265320.1 Alkaloid IO medium borderline
Cretscaffold86063_cov860265350.1 Alkaloid IO medium borderline
Cretscaffold86063_cov860266020.1 Alkaloid IO medium borderline
Cretscaffold86078_cov820271040.1 Alkaloid IO medium borderline
Cretscaffold89257_cov1810284430.1 Alkaloid IO medium borderline