Citrus reticulata (citrus_reticulata)
Imported from atlas release summary for Citrus reticulata.
2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2423
Candidate Genes
C4H
5.91%
BAHD
5.74%
C3'H/CYP98A
5.67%
CYP76
4.22%
IFS
3.98%
NMT
3.68%
4CL
3.58%
T3O
3.39%
Other Families
63.84%
More Families (96)
UGT
195
3.37%
POD
171
2.96%
7DLGT
168
2.9%
UFGT
167
2.89%
F3H
158
2.73%
DWF4/CYP90B1
149
2.58%
BR6OX2/CYP85A2
114
1.97%
COMT
113
1.95%
TPS
106
1.83%
GES
104
1.8%
CODM/T6ODM
103
1.78%
STR
101
1.75%
CAS
99
1.71%
F3'H/CYP75B
98
1.69%
CAD
87
1.5%
CYP71
82
1.42%
HCT
72
1.24%
RAS
64
1.11%
BBE
61
1.05%
IFR
61
1.05%
SMT1/SMT2/SMT3
60
1.04%
TRI/TRII
59
1.02%
G8O/G8H
58
1.0%
16OMT
56
0.97%
CYP90D1
56
0.97%
H6H
54
0.93%
T16H
47
0.81%
SGD
45
0.78%
TAT
45
0.78%
GS
39
0.67%
CSE
39
0.67%
PYKS
38
0.66%
F3'5'H/CYP75A
38
0.66%
IO
37
0.64%
COR
33
0.57%
PMT
32
0.55%
LAC
31
0.54%
GGPPS
31
0.54%
ISY
29
0.5%
CCR
29
0.5%
ANR
28
0.48%
FNS
28
0.48%
7DLH
27
0.47%
LAMT
26
0.45%
F5H/CYP84A
26
0.45%
CPD/CYP90A1
25
0.43%
NCS
23
0.4%
8HGO
18
0.31%
CYP51G1
18
0.31%
SLS
17
0.29%
CHS
17
0.29%
DFR
17
0.29%
CCoAOMT
17
0.29%
CNMT
16
0.28%
SQE
16
0.28%
MPO
15
0.26%
PAL
15
0.26%
AACT
14
0.24%
CPR
13
0.22%
ANS/LDOX
11
0.19%
CHI
11
0.19%
TYDC_DDC
10
0.17%
CYP80B1
10
0.17%
SQS/FDFT1
10
0.17%
CYP719
9
0.16%
BR6OX1/CYP85A1
9
0.16%
HPPR
8
0.14%
FPPS
8
0.14%
MVK
8
0.14%
TDC
6
0.1%
XMT_MXMT_DXMT
6
0.1%
HYD1
6
0.1%
ROT3/CYP90C1
6
0.1%
DXR
6
0.1%
ODC
5
0.09%
FLS
5
0.09%
DXS
5
0.09%
MCT/IspD
5
0.09%
SMO1/SMO2
4
0.07%
FK
4
0.07%
MVD
4
0.07%
ADC
3
0.05%
DWF7
3
0.05%
DET2
3
0.05%
CMK/IspE
3
0.05%
HDS/IspG
3
0.05%
HMGS
3
0.05%
HDR/IspH
3
0.05%
6OMT_4OMT_SOMT
2
0.03%
CPI1
2
0.03%
PMK
2
0.03%
HMGR
2
0.03%
DWF1
1
0.02%
DWF5
1
0.02%
MDS/IspF
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 681 | 19 | BAHD (278) | View species results |
| Alkaloid pathway | 615 | 23 | NMT (134) | View species results |
| Phenylpropanoid pathway | 481 | 12 | POD (160) | View species results |
| Flavonoid pathway | 242 | 12 | UFGT (142) | View species results |
| Rosmarinic acid pathway | 234 | 7 | C4H (96) | View species results |
| Steroid pathway | 170 | 13 | CAS (87) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2166 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 468 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cretscaffold1027_cov900003480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold1027_cov900003490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold1027_cov900003490.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold1027_cov900003490.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold10366_cov890004650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold11345_cov920006290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold11345_cov920006300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold11345_cov920006310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold11345_cov920006380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold11345_cov920006380.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold11345_cov920006380.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold11345_cov920007350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold2179_cov930033510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold2179_cov930033510.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold2179_cov930033510.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold2179_cov930033510.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold2179_cov930033510.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold2179_cov930033510.6 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold276_cov890044650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold276_cov890046240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold276_cov890046580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold276_cov890046580.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold276_cov890046580.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold276_cov890046580.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold28000_cov970047990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold294_cov920052490.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Cretscaffold294_cov920052530.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cretscaffold2974_cov880058170.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold2974_cov880058180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold3805_cov820066340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold3805_cov820066350.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold39_cov910069410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold39_cov910069420.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold39_cov910069430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold39_cov910069450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold39_cov910069470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold39_cov910069480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold39_cov910069490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold39_cov910069500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold39_cov910069510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold39_cov910072740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold39_cov910072740.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold39_cov910072740.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold429_cov910083280.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold429_cov910084300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold429_cov910084300.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold429_cov910084300.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold429_cov910084300.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold429_cov910084300.5 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cretscaffold429_cov910084300.6 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |