PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
Cretscaffold1027_cov900002460.1 Alkaloid T16H medium borderline
Cretscaffold1080_cov610005140.1 Alkaloid T16H medium borderline
Cretscaffold1080_cov610005160.1 Alkaloid T16H medium borderline
Cretscaffold1080_cov610005170.1 Alkaloid T16H medium pass
Cretscaffold11345_cov920006530.1 Alkaloid T16H medium borderline
Cretscaffold11345_cov920007940.1 Alkaloid T16H medium borderline
Cretscaffold14175_cov1110020450.1 Alkaloid T16H medium borderline
Cretscaffold22_cov910035650.1 Alkaloid T16H low borderline
Cretscaffold294_cov920049960.1 Alkaloid T16H medium borderline
Cretscaffold43322_cov1250087260.1 Alkaloid T16H low borderline
Cretscaffold480_cov830092800.1 Alkaloid T16H medium borderline
Cretscaffold480_cov830092810.1 Alkaloid T16H medium borderline
Cretscaffold499_cov790098180.1 Alkaloid T16H low borderline
Cretscaffold51446_cov710098900.1 Alkaloid T16H medium borderline
Cretscaffold81689_cov1450123800.1 Alkaloid T16H medium borderline
Cretscaffold83267_cov900127950.1 Alkaloid T16H medium borderline
Cretscaffold83267_cov900127980.1 Alkaloid T16H medium pass
Cretscaffold849_cov840135650.1 Alkaloid T16H medium borderline
Cretscaffold85909_cov900151430.2 Alkaloid T16H low borderline
Cretscaffold85909_cov900151430.3 Alkaloid T16H low borderline
Cretscaffold85909_cov900159140.4 Alkaloid T16H low borderline
Cretscaffold85913_cov830161100.1 Alkaloid T16H medium borderline
Cretscaffold85913_cov830162280.1 Alkaloid T16H medium borderline
Cretscaffold85924_cov870184990.1 Alkaloid T16H medium borderline
Cretscaffold85925_cov910186310.1 Alkaloid T16H low borderline
Cretscaffold85925_cov910187500.2 Alkaloid T16H low borderline
Cretscaffold85927_cov850190210.1 Alkaloid T16H medium borderline
Cretscaffold85927_cov850190220.1 Alkaloid T16H medium borderline
Cretscaffold85940_cov860199850.1 Alkaloid T16H medium borderline
Cretscaffold85962_cov920206870.1 Alkaloid T16H medium borderline
Cretscaffold85962_cov920206900.1 Alkaloid T16H medium borderline
Cretscaffold85962_cov920206920.1 Alkaloid T16H medium borderline
Cretscaffold85962_cov920206940.1 Alkaloid T16H medium borderline
Cretscaffold86001_cov870224350.1 Alkaloid T16H low borderline
Cretscaffold86027_cov910232900.2 Alkaloid T16H low borderline
Cretscaffold86027_cov910238410.2 Alkaloid T16H medium borderline
Cretscaffold86027_cov910238450.1 Alkaloid T16H medium borderline
Cretscaffold86030_cov920239640.1 Alkaloid T16H medium borderline
Cretscaffold86030_cov920239640.2 Alkaloid T16H medium borderline
Cretscaffold86030_cov920239650.1 Alkaloid T16H medium borderline
Cretscaffold86040_cov830244860.1 Alkaloid T16H low borderline
Cretscaffold86048_cov930258720.1 Alkaloid T16H medium borderline
Cretscaffold86048_cov930259270.1 Alkaloid T16H low borderline
Cretscaffold86063_cov860266060.1 Alkaloid T16H medium borderline
Cretscaffold86382_cov2050274620.1 Alkaloid T16H medium borderline
Cretscaffold89765_cov1920285110.1 Alkaloid T16H medium pass
Cretscaffold9725_cov1180287540.1 Alkaloid T16H medium borderline