PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status
Cretscaffold11345_cov920006840.1 Phenylpropanoid CCR medium borderline
Cretscaffold1382_cov810019810.1 Phenylpropanoid CCR low borderline
Cretscaffold294_cov920051640.1 Phenylpropanoid CCR low borderline
Cretscaffold39867_cov680068560.1 Phenylpropanoid CCR medium borderline
Cretscaffold81160_cov1070122790.1 Phenylpropanoid CCR medium pass
Cretscaffold85899_cov890144170.1 Phenylpropanoid CCR medium borderline
Cretscaffold85923_cov900181100.1 Phenylpropanoid CCR medium borderline
Cretscaffold85923_cov900181100.2 Phenylpropanoid CCR medium borderline
Cretscaffold85923_cov900181100.3 Phenylpropanoid CCR medium borderline
Cretscaffold85923_cov900181100.4 Phenylpropanoid CCR medium borderline
Cretscaffold85923_cov900181290.1 Phenylpropanoid CCR medium borderline
Cretscaffold85923_cov900181290.2 Phenylpropanoid CCR medium borderline
Cretscaffold85928_cov1000190980.1 Phenylpropanoid CCR medium borderline
Cretscaffold85928_cov1000190990.1 Phenylpropanoid CCR medium borderline
Cretscaffold85928_cov1000190990.2 Phenylpropanoid CCR medium borderline
Cretscaffold85928_cov1000190990.3 Phenylpropanoid CCR medium borderline
Cretscaffold85928_cov1000191020.1 Phenylpropanoid CCR medium borderline
Cretscaffold85938_cov950196870.1 Phenylpropanoid CCR medium pass
Cretscaffold85973_cov870214130.1 Phenylpropanoid CCR low borderline
Cretscaffold85995_cov800222900.1 Phenylpropanoid CCR medium pass
Cretscaffold86027_cov910232640.1 Phenylpropanoid CCR medium borderline
Cretscaffold86040_cov830245570.1 Phenylpropanoid CCR low borderline
Cretscaffold86040_cov830245570.2 Phenylpropanoid CCR low borderline
Cretscaffold86042_cov890248370.1 Phenylpropanoid CCR low borderline
Cretscaffold86042_cov890248370.2 Phenylpropanoid CCR low borderline
Cretscaffold86042_cov890248370.5 Phenylpropanoid CCR low borderline
Cretscaffold86061_cov890263820.1 Phenylpropanoid CCR low borderline
Cretscaffold86063_cov860265150.1 Phenylpropanoid CCR medium borderline
Cretscaffold86063_cov860265150.2 Phenylpropanoid CCR medium borderline