PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
Cretscaffold276_cov890045850.1 Alkaloid GS low borderline
Cretscaffold276_cov890045850.2 Alkaloid GS low borderline
Cretscaffold276_cov890045850.3 Alkaloid GS low borderline
Cretscaffold276_cov890045850.4 Alkaloid GS low borderline
Cretscaffold2964_cov920054810.1 Alkaloid GS low borderline
Cretscaffold2964_cov920054810.2 Alkaloid GS low borderline
Cretscaffold33025_cov1010061160.1 Alkaloid GS low borderline
Cretscaffold37361_cov910064810.1 Alkaloid GS medium pass
Cretscaffold426_cov900079910.1 Alkaloid GS high pass
Cretscaffold429_cov910083470.1 Alkaloid GS high pass
Cretscaffold429_cov910083480.1 Alkaloid GS high pass
Cretscaffold429_cov910083490.1 Alkaloid GS high pass
Cretscaffold429_cov910083500.1 Alkaloid GS high pass
Cretscaffold45223_cov630090760.1 Alkaloid GS medium pass
Cretscaffold45223_cov630090760.2 Alkaloid GS medium pass
Cretscaffold514_cov870103250.1 Alkaloid GS low borderline
Cretscaffold58945_cov890111840.1 Alkaloid GS medium pass
Cretscaffold83704_cov1070133710.1 Alkaloid GS low borderline
Cretscaffold85899_cov890144980.1 Alkaloid GS medium pass
Cretscaffold85899_cov890144980.2 Alkaloid GS medium pass
Cretscaffold85899_cov890144990.1 Alkaloid GS medium pass
Cretscaffold85899_cov890144990.2 Alkaloid GS medium pass
Cretscaffold85905_cov920148630.1 Alkaloid GS low borderline
Cretscaffold85905_cov920148640.1 Alkaloid GS low borderline
Cretscaffold85905_cov920148650.1 Alkaloid GS low borderline
Cretscaffold85918_cov900168370.1 Alkaloid GS low borderline
Cretscaffold85924_cov870185310.1 Alkaloid GS low borderline
Cretscaffold85938_cov950196700.1 Alkaloid GS low borderline
Cretscaffold85938_cov950196710.1 Alkaloid GS low borderline
Cretscaffold85956_cov860203370.1 Alkaloid GS high pass
Cretscaffold86026_cov920228030.1 Alkaloid GS low borderline
Cretscaffold86027_cov910232880.1 Alkaloid GS low borderline
Cretscaffold86030_cov920240120.1 Alkaloid GS low borderline
Cretscaffold86041_cov890246790.1 Alkaloid GS high pass
Cretscaffold86041_cov890246790.2 Alkaloid GS high pass
Cretscaffold86048_cov930255820.1 Alkaloid GS high pass
Cretscaffold86048_cov930258710.1 Alkaloid GS low borderline
Cretscaffold86048_cov930258710.2 Alkaloid GS low borderline
Cretscaffold86048_cov930258710.3 Alkaloid GS low borderline