PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status
Cretscaffold273_cov940042100.1 Alkaloid LAMT medium borderline
Cretscaffold3776_cov870065270.1 Alkaloid LAMT medium borderline
Cretscaffold3776_cov870065280.1 Alkaloid LAMT medium borderline
Cretscaffold3776_cov870065290.1 Alkaloid LAMT medium borderline
Cretscaffold3776_cov870065340.1 Alkaloid LAMT medium borderline
Cretscaffold429_cov910085870.1 Alkaloid LAMT medium borderline
Cretscaffold4775_cov980092380.1 Alkaloid LAMT medium borderline
Cretscaffold521_cov930106160.1 Alkaloid LAMT medium borderline
Cretscaffold521_cov930106160.2 Alkaloid LAMT medium borderline
Cretscaffold780_cov840120680.1 Alkaloid LAMT medium borderline
Cretscaffold83267_cov900127450.1 Alkaloid LAMT medium pass
Cretscaffold85909_cov900157600.1 Alkaloid LAMT medium borderline
Cretscaffold85909_cov900157610.1 Alkaloid LAMT medium borderline
Cretscaffold85909_cov900157610.2 Alkaloid LAMT medium borderline
Cretscaffold85909_cov900157620.1 Alkaloid LAMT medium borderline
Cretscaffold85909_cov900160130.1 Alkaloid LAMT medium borderline
Cretscaffold85909_cov900160130.2 Alkaloid LAMT medium borderline
Cretscaffold85924_cov870181720.1 Alkaloid LAMT low borderline
Cretscaffold85925_cov910187470.1 Alkaloid LAMT medium borderline
Cretscaffold85931_cov990192090.1 Alkaloid LAMT medium borderline
Cretscaffold85931_cov990192090.2 Alkaloid LAMT medium borderline
Cretscaffold86012_cov790225180.1 Alkaloid LAMT medium borderline
Cretscaffold86041_cov890247490.1 Alkaloid LAMT medium borderline
Cretscaffold86042_cov890252550.1 Alkaloid LAMT medium borderline
Cretscaffold86042_cov890252560.1 Alkaloid LAMT medium borderline
Cretscaffold86042_cov890252570.1 Alkaloid LAMT medium borderline