PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Cretscaffold1027_cov900001480.1 Flavonoid UFGT high pass
Cretscaffold11345_cov920006660.1 Flavonoid UFGT low borderline
Cretscaffold11345_cov920006680.1 Flavonoid UFGT medium pass
Cretscaffold11345_cov920006690.1 Flavonoid UFGT medium pass
Cretscaffold11345_cov920007950.1 Flavonoid UFGT high pass
Cretscaffold11345_cov920008020.1 Flavonoid UFGT medium pass
Cretscaffold11345_cov920008220.1 Flavonoid UFGT medium pass
Cretscaffold11345_cov920008230.1 Flavonoid UFGT high pass
Cretscaffold11345_cov920008240.1 Flavonoid UFGT medium pass
Cretscaffold11345_cov920009120.1 Flavonoid UFGT high pass
Cretscaffold11345_cov920009130.1 Flavonoid UFGT medium pass
Cretscaffold11439_cov810010300.1 Flavonoid UFGT medium pass
Cretscaffold11439_cov810010310.1 Flavonoid UFGT medium pass
Cretscaffold11631_cov490010640.1 Flavonoid UFGT medium pass
Cretscaffold132_cov940018380.1 Flavonoid UFGT high pass
Cretscaffold1567_cov780023430.1 Flavonoid UFGT medium pass
Cretscaffold17979_cov640026570.1 Flavonoid UFGT low borderline
Cretscaffold17980_cov610026580.1 Flavonoid UFGT high pass
Cretscaffold17980_cov610026590.1 Flavonoid UFGT high pass
Cretscaffold181_cov890027830.1 Flavonoid UFGT medium pass
Cretscaffold19944_cov1030031190.1 Flavonoid UFGT high pass
Cretscaffold22_cov910036830.1 Flavonoid UFGT medium pass
Cretscaffold23652_cov830038160.1 Flavonoid UFGT high pass
Cretscaffold27233_cov1080040140.1 Flavonoid UFGT high pass
Cretscaffold27233_cov1080040150.1 Flavonoid UFGT medium pass
Cretscaffold276_cov890045810.1 Flavonoid UFGT high pass
Cretscaffold276_cov890046290.1 Flavonoid UFGT medium pass
Cretscaffold3041_cov700059100.1 Flavonoid UFGT medium pass
Cretscaffold3182_cov750060140.1 Flavonoid UFGT high pass
Cretscaffold34467_cov1140062620.1 Flavonoid UFGT low borderline
Cretscaffold346_cov870063260.1 Flavonoid UFGT high pass
Cretscaffold4070_cov900075480.1 Flavonoid UFGT low borderline
Cretscaffold4070_cov900075490.1 Flavonoid UFGT high pass
Cretscaffold4070_cov900075500.1 Flavonoid UFGT medium pass
Cretscaffold4070_cov900075510.1 Flavonoid UFGT medium pass
Cretscaffold4070_cov900075520.1 Flavonoid UFGT medium pass
Cretscaffold4070_cov900075530.1 Flavonoid UFGT medium pass
Cretscaffold4070_cov900075560.1 Flavonoid UFGT medium pass
Cretscaffold4070_cov900075570.1 Flavonoid UFGT low borderline
Cretscaffold4070_cov900075580.1 Flavonoid UFGT medium pass
Cretscaffold4070_cov900075590.1 Flavonoid UFGT medium pass
Cretscaffold426_cov900079870.1 Flavonoid UFGT medium pass
Cretscaffold426_cov900079880.1 Flavonoid UFGT low borderline
Cretscaffold426_cov900080150.1 Flavonoid UFGT low borderline
Cretscaffold426_cov900080190.1 Flavonoid UFGT medium pass
Cretscaffold426_cov900080200.1 Flavonoid UFGT medium pass
Cretscaffold426_cov900080210.1 Flavonoid UFGT medium pass
Cretscaffold426_cov900080220.1 Flavonoid UFGT medium pass
Cretscaffold426_cov900080240.1 Flavonoid UFGT medium pass
Cretscaffold426_cov900080250.1 Flavonoid UFGT low borderline