PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
Reset
Gene Pathway Family Confidence Status
Cretscaffold11345_cov920009690.1 Alkaloid PYKS low borderline
Cretscaffold18765_cov1340030140.1 Alkaloid PYKS medium pass
Cretscaffold2179_cov930033290.1 Alkaloid PYKS low borderline
Cretscaffold2179_cov930033290.2 Alkaloid PYKS low borderline
Cretscaffold294_cov920050200.1 Alkaloid PYKS low borderline
Cretscaffold294_cov920051680.1 Alkaloid PYKS low borderline
Cretscaffold2964_cov920053590.1 Alkaloid PYKS high pass
Cretscaffold3776_cov870065100.1 Alkaloid PYKS low borderline
Cretscaffold397_cov790067930.1 Alkaloid PYKS high pass
Cretscaffold4658_cov1140091720.1 Alkaloid PYKS high pass
Cretscaffold497_cov940096780.1 Alkaloid PYKS low borderline
Cretscaffold5933_cov910112130.1 Alkaloid PYKS high pass
Cretscaffold5933_cov910112160.1 Alkaloid PYKS high pass
Cretscaffold82373_cov750124830.1 Alkaloid PYKS high pass
Cretscaffold83267_cov900126410.1 Alkaloid PYKS high pass
Cretscaffold85874_cov810138840.1 Alkaloid PYKS low borderline
Cretscaffold85874_cov810138840.2 Alkaloid PYKS low borderline
Cretscaffold85874_cov810138860.1 Alkaloid PYKS low borderline
Cretscaffold85874_cov810138870.1 Alkaloid PYKS low borderline
Cretscaffold85899_cov890144190.1 Alkaloid PYKS low borderline
Cretscaffold85947_cov920201780.1 Alkaloid PYKS low borderline
Cretscaffold85973_cov870211290.1 Alkaloid PYKS low borderline
Cretscaffold85973_cov870211310.1 Alkaloid PYKS low borderline
Cretscaffold85994_cov870222020.1 Alkaloid PYKS low borderline
Cretscaffold85995_cov800222910.1 Alkaloid PYKS high pass
Cretscaffold85995_cov800222920.1 Alkaloid PYKS high pass
Cretscaffold85995_cov800222940.1 Alkaloid PYKS high pass
Cretscaffold86027_cov910230030.1 Alkaloid PYKS low borderline
Cretscaffold86027_cov910230030.2 Alkaloid PYKS low borderline
Cretscaffold86027_cov910231910.1 Alkaloid PYKS medium pass
Cretscaffold86027_cov910235650.1 Alkaloid PYKS low borderline
Cretscaffold86048_cov930257410.1 Alkaloid PYKS low borderline
Cretscaffold86066_cov840267730.1 Alkaloid PYKS low borderline
Cretscaffold86082_cov970273160.1 Alkaloid PYKS low borderline
Cretscaffold8841_cov910277450.1 Alkaloid PYKS high pass
Cretscaffold8841_cov910277450.2 Alkaloid PYKS high pass
Cretscaffold8841_cov910277460.1 Alkaloid PYKS high pass
Cretscaffold8841_cov910282600.1 Alkaloid PYKS low borderline