PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
Cretscaffold1027_cov900001480.1 Alkaloid 7DLGT low borderline
Cretscaffold10280_cov790004540.1 Alkaloid 7DLGT low borderline
Cretscaffold11345_cov920006660.1 Alkaloid 7DLGT low borderline
Cretscaffold11345_cov920006680.1 Alkaloid 7DLGT low borderline
Cretscaffold11345_cov920006690.1 Alkaloid 7DLGT low borderline
Cretscaffold11345_cov920007950.1 Alkaloid 7DLGT high pass
Cretscaffold11345_cov920008020.1 Alkaloid 7DLGT high pass
Cretscaffold11345_cov920008220.1 Alkaloid 7DLGT high pass
Cretscaffold11345_cov920008230.1 Alkaloid 7DLGT high pass
Cretscaffold11345_cov920008240.1 Alkaloid 7DLGT high pass
Cretscaffold11345_cov920009120.1 Alkaloid 7DLGT medium pass
Cretscaffold11345_cov920009130.1 Alkaloid 7DLGT medium pass
Cretscaffold11439_cov810010300.1 Alkaloid 7DLGT low borderline
Cretscaffold11439_cov810010310.1 Alkaloid 7DLGT low borderline
Cretscaffold11631_cov490010640.1 Alkaloid 7DLGT medium pass
Cretscaffold132_cov940018260.1 Alkaloid 7DLGT low borderline
Cretscaffold132_cov940018380.1 Alkaloid 7DLGT low borderline
Cretscaffold1567_cov780023430.1 Alkaloid 7DLGT low borderline
Cretscaffold17979_cov640026570.1 Alkaloid 7DLGT low borderline
Cretscaffold17980_cov610026580.1 Alkaloid 7DLGT medium pass
Cretscaffold17980_cov610026590.1 Alkaloid 7DLGT medium pass
Cretscaffold181_cov890027830.1 Alkaloid 7DLGT low borderline
Cretscaffold19944_cov1030031190.1 Alkaloid 7DLGT medium pass
Cretscaffold22_cov910036830.1 Alkaloid 7DLGT low borderline
Cretscaffold23652_cov830038160.1 Alkaloid 7DLGT medium pass
Cretscaffold27233_cov1080040140.1 Alkaloid 7DLGT medium pass
Cretscaffold27233_cov1080040150.1 Alkaloid 7DLGT low borderline
Cretscaffold276_cov890045810.1 Alkaloid 7DLGT low borderline
Cretscaffold276_cov890046290.1 Alkaloid 7DLGT medium pass
Cretscaffold3041_cov700059100.1 Alkaloid 7DLGT low borderline
Cretscaffold3182_cov750060140.1 Alkaloid 7DLGT medium pass
Cretscaffold346_cov870063260.1 Alkaloid 7DLGT medium pass
Cretscaffold4070_cov900075480.1 Alkaloid 7DLGT medium pass
Cretscaffold4070_cov900075490.1 Alkaloid 7DLGT low borderline
Cretscaffold4070_cov900075500.1 Alkaloid 7DLGT low borderline
Cretscaffold4070_cov900075510.1 Alkaloid 7DLGT low borderline
Cretscaffold4070_cov900075520.1 Alkaloid 7DLGT medium pass
Cretscaffold4070_cov900075530.1 Alkaloid 7DLGT low borderline
Cretscaffold4070_cov900075560.1 Alkaloid 7DLGT low borderline
Cretscaffold4070_cov900075580.1 Alkaloid 7DLGT low borderline
Cretscaffold4070_cov900075590.1 Alkaloid 7DLGT low borderline
Cretscaffold426_cov900079870.1 Alkaloid 7DLGT low borderline
Cretscaffold426_cov900079880.1 Alkaloid 7DLGT low borderline
Cretscaffold426_cov900080150.1 Alkaloid 7DLGT low borderline
Cretscaffold426_cov900080190.1 Alkaloid 7DLGT low borderline
Cretscaffold426_cov900080200.1 Alkaloid 7DLGT low borderline
Cretscaffold426_cov900080210.1 Alkaloid 7DLGT medium pass
Cretscaffold426_cov900080220.1 Alkaloid 7DLGT medium pass
Cretscaffold426_cov900080240.1 Alkaloid 7DLGT medium pass
Cretscaffold426_cov900080250.1 Alkaloid 7DLGT low borderline