PlantSME Plant secondary metabolism enzyme database
TDC

TDC

Atlas summary family TDC.

Lineage Coverage
Detected in 29 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Miscanthus lutarioriparius
Chrysanthemum seticuspe
Zoysia matrella
Aegilops tauschii
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 33 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
Carb970350185810.1 clethra_arborea Carb970350185810.1
CLame613060013200 climacium_americanum CLame613060013200
CLame659790074180 climacium_americanum CLame659790074180
CLame667880202430 climacium_americanum CLame667880202430
CLame668110207820 climacium_americanum CLame668110207820
CnucC692226300002190 cocos_nucifera CnucC692226300002190
Cnucscaffold30250138010 cocos_nucifera Cnucscaffold30250138010
Cnucscaffold51710199640 cocos_nucifera Cnucscaffold51710199640
Cnucscaffold740245750 cocos_nucifera Cnucscaffold740245750
Cnucscaffold740245760 cocos_nucifera Cnucscaffold740245760
codonopsis_lanceolata_Cl_C15521_unscaffolded_00010T codonopsis_lanceolata codonopsis_lanceolata_Cl_C15521_unscaffolded_00010T
codonopsis_lanceolata_Cl_chr06_35490T codonopsis_lanceolata codonopsis_lanceolata_Cl_chr06_35490T
Ccane01G0017720.1 coffea_canephora Ccane01G0017720.1
Ccane05G0004740.1 coffea_canephora Ccane05G0004740.1
Ccanescaffold_17240008520.1 coffea_canephora Ccanescaffold_17240008520.1
coix_lacryma-jobi_GWHPAAYR003837 coix_lacryma_jobi coix_lacryma-jobi_GWHPAAYR003837
coix_lacryma-jobi_GWHPAAYR035441 coix_lacryma_jobi coix_lacryma-jobi_GWHPAAYR035441
coix_lacryma-jobi_GWHPAAYR035442 coix_lacryma_jobi coix_lacryma-jobi_GWHPAAYR035442
coix_lacryma-jobi_GWHPAAYR035443 coix_lacryma_jobi coix_lacryma-jobi_GWHPAAYR035443
coix_lacryma-jobi_GWHPAAYR035444 coix_lacryma_jobi coix_lacryma-jobi_GWHPAAYR035444
coix_lacryma-jobi_GWHPAAYR055421 coix_lacryma_jobi coix_lacryma-jobi_GWHPAAYR055421
coix_lacryma-jobi_GWHPAAYR055422 coix_lacryma_jobi coix_lacryma-jobi_GWHPAAYR055422
colocasia_esculenta_EVM0004127.1 colocasia_esculenta colocasia_esculenta_EVM0004127.1
colocasia_esculenta_EVM0015052.1 colocasia_esculenta colocasia_esculenta_EVM0015052.1
Cconscaffold_10002800 conocephalum_conicum Cconscaffold_10002800
Cconscaffold_30056030 conocephalum_conicum Cconscaffold_30056030
Cconscaffold_70155820 conocephalum_conicum Cconscaffold_70155820
Ccapcontig079160055950.1 corchorus_capsularis Ccapcontig079160055950.1
Ccapcontig131540213640.1 corchorus_capsularis Ccapcontig131540213640.1
COsat02G0018450.1 coriandrum_sativum COsat02G0018450.1