PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
CLame544630007540 Alkaloid 16OMT medium borderline
CLame641600020490 Alkaloid 16OMT medium borderline
CLame659700073230 Alkaloid 16OMT medium borderline
CLame665570147200 Alkaloid 16OMT medium borderline
CLame667710196840 Alkaloid 16OMT medium borderline
CLame667710196850 Alkaloid 16OMT medium borderline
CLame668140209600 Alkaloid 16OMT medium borderline
CLame668690226960 Alkaloid 16OMT low borderline
CLame668880230260 Alkaloid 16OMT medium borderline
CLame645040022800 Alkaloid 6OMT_4OMT_SOMT medium borderline
CLame667130180850 Alkaloid 6OMT_4OMT_SOMT low borderline
CLame586830010180 Alkaloid 7DLGT low borderline
CLame587420010510 Alkaloid 7DLGT medium pass
CLame640390019010 Alkaloid 7DLGT medium pass
CLame648490026990 Alkaloid 7DLGT medium pass
CLame650170030210 Alkaloid 7DLGT low borderline
CLame651120032420 Alkaloid 7DLGT medium pass
CLame651120032430 Alkaloid 7DLGT medium pass
CLame655310046620 Alkaloid 7DLGT medium pass
CLame658040060940 Alkaloid 7DLGT low borderline
CLame658270062430 Alkaloid 7DLGT medium pass
CLame658270062440 Alkaloid 7DLGT medium pass
CLame658750065990 Alkaloid 7DLGT medium pass
CLame660050076700 Alkaloid 7DLGT medium pass
CLame660050076720 Alkaloid 7DLGT medium pass
CLame660540080330 Alkaloid 7DLGT low borderline
CLame662960107050 Alkaloid 7DLGT medium pass
CLame663320111650 Alkaloid 7DLGT medium pass
CLame663430113060 Alkaloid 7DLGT medium pass
CLame663430113100 Alkaloid 7DLGT medium pass
CLame664400124560 Alkaloid 7DLGT medium pass
CLame665490145160 Alkaloid 7DLGT low borderline
CLame665940153450 Alkaloid 7DLGT low borderline
CLame666970176130 Alkaloid 7DLGT low borderline
CLame667710197010 Alkaloid 7DLGT medium pass
CLame668280213620 Alkaloid 7DLGT medium pass
CLame668350216230 Alkaloid 7DLGT low borderline
CLame669000232900 Alkaloid 7DLGT low borderline
CLame669080234660 Alkaloid 7DLGT low borderline
CLame656330051260 Alkaloid 7DLH medium borderline
CLame666000154620 Alkaloid 7DLH medium borderline
CLame666000154680 Alkaloid 7DLH medium borderline
CLame666540166540 Alkaloid 7DLH medium borderline
CLame667010176760 Alkaloid 7DLH low borderline
CLame667750198670 Alkaloid 7DLH medium borderline
CLame667830200960 Alkaloid 7DLH low borderline
CLame667990205470 Alkaloid 7DLH medium borderline
CLame667990205480 Alkaloid 7DLH medium borderline
CLame668620224760 Alkaloid 7DLH medium borderline
CLame668620224770 Alkaloid 7DLH medium borderline