PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
CLame608580012420 Terpenoid AACT medium borderline
CLame659890074910 Terpenoid AACT medium borderline
CLame665070136310 Terpenoid AACT medium borderline
CLame668280213420 Terpenoid AACT low borderline
CLame668290214250 Terpenoid AACT medium borderline
CLame476920001490 Terpenoid BAHD low borderline
CLame482940002980 Terpenoid BAHD low borderline
CLame542080007280 Terpenoid BAHD low borderline
CLame564410008730 Terpenoid BAHD medium pass
CLame604960011100 Terpenoid BAHD medium pass
CLame604990011160 Terpenoid BAHD medium pass
CLame616240014200 Terpenoid BAHD medium pass
CLame632130016110 Terpenoid BAHD medium pass
CLame632820016700 Terpenoid BAHD low borderline
CLame634000016930 Terpenoid BAHD medium pass
CLame635430017320 Terpenoid BAHD medium pass
CLame645130022860 Terpenoid BAHD medium pass
CLame646220023990 Terpenoid BAHD low borderline
CLame646800024520 Terpenoid BAHD low borderline
CLame648570027160 Terpenoid BAHD medium pass
CLame648570027170 Terpenoid BAHD medium pass
CLame648720027440 Terpenoid BAHD medium pass
CLame650320030680 Terpenoid BAHD low borderline
CLame650330030760 Terpenoid BAHD low borderline
CLame650700031630 Terpenoid BAHD medium pass
CLame652730036360 Terpenoid BAHD medium pass
CLame654640042920 Terpenoid BAHD low borderline
CLame654760043860 Terpenoid BAHD low borderline
CLame655110045520 Terpenoid BAHD medium pass
CLame655180045910 Terpenoid BAHD medium pass
CLame655260046320 Terpenoid BAHD medium pass
CLame657740059090 Terpenoid BAHD low borderline
CLame658270062480 Terpenoid BAHD medium pass
CLame659550072090 Terpenoid BAHD medium pass
CLame659840074700 Terpenoid BAHD medium pass
CLame660240078100 Terpenoid BAHD medium pass
CLame660240078130 Terpenoid BAHD low borderline
CLame660820083420 Terpenoid BAHD medium pass
CLame661040085740 Terpenoid BAHD medium pass
CLame661380088260 Terpenoid BAHD medium pass
CLame662200097900 Terpenoid BAHD medium pass
CLame662720103730 Terpenoid BAHD medium pass
CLame663330111760 Terpenoid BAHD low borderline
CLame663550114670 Terpenoid BAHD medium pass
CLame663850118480 Terpenoid BAHD medium pass
CLame663950119140 Terpenoid BAHD medium pass
CLame664120121240 Terpenoid BAHD low borderline
CLame664120121260 Terpenoid BAHD low borderline
CLame664220122690 Terpenoid BAHD low borderline
CLame664430125000 Terpenoid BAHD medium pass