Climacium americanum (climacium_americanum)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Phenylpropanoid pathway 26.7% Terpenoid pathway 23.92% Alkaloid pathway 18.36% Flavonoid pathway 13.58% Rosmarinic acid pathway 11.27% Steroid pathway 6.17%

Family Distribution

648 Candidate Genes

C4H 6.6% POD 6.17% C3'H/CYP98A 5.38% BAHD 5.38% 4CL 4.77% CYP76 3.79% NMT 3.3% IFS 3.3%

Other Families 61.31%

More Families (94)

PAL 51 3.12% F3H 42 2.57% STR 39 2.38% IFR 37 2.26% BR6OX2/CYP85A2 36 2.2% F3'H/CYP75B 33 2.02% UGT 33 2.02% GS 32 1.96% T3O 31 1.89% DWF4/CYP90B1 31 1.89% UFGT 30 1.83% IO 28 1.71% 7DLGT 28 1.71% CODM/T6ODM 26 1.59% PYKS 26 1.59% CAD 23 1.41% SMT1/SMT2/SMT3 20 1.22% CAS 20 1.22% H6H 17 1.04% TRI/TRII 17 1.04% CYP71 17 1.04% SLS 16 0.98% CHS 16 0.98% CYP90D1 16 0.98% G8O/G8H 15 0.92% CSE 15 0.92% F3'5'H/CYP75A 14 0.86% 7DLH 13 0.79% COMT 13 0.79% NCS 12 0.73% RAS 11 0.67% CPD/CYP90A1 11 0.67% SGD 10 0.61% HCT 10 0.61% LAMT 9 0.55% 16OMT 9 0.55% LAC 9 0.55% 8HGO 8 0.49% F5H/CYP84A 8 0.49% COR 7 0.43% ANR 7 0.43% SQS/FDFT1 7 0.43% BBE 6 0.37% T16H 6 0.37% CNMT 5 0.31% TDC 5 0.31% MPO 5 0.31% PMT 5 0.31% FNS 5 0.31% CCR 5 0.31% CPR 5 0.31% BR6OX1/CYP85A1 5 0.31% DWF5 5 0.31% AACT 5 0.31% CHI 4 0.24% DET2 4 0.24% GGPPS 4 0.24% FPPS 4 0.24% TPS 4 0.24% MVD 4 0.24% GES 3 0.18% TYDC_DDC 3 0.18% ADC 3 0.18% FLS 3 0.18% DFR 3 0.18% TAT 3 0.18% ROT3/CYP90C1 3 0.18% SQE 3 0.18% SMO1/SMO2 3 0.18% MVK 3 0.18% HDS/IspG 3 0.18% MDS/IspF 3 0.18% 6OMT_4OMT_SOMT 2 0.12% CYP719 2 0.12% CCoAOMT 2 0.12% CYP51G1 2 0.12% HMGS 2 0.12% MCT/IspD 2 0.12% ISY 1 0.06% CYP80B1 1 0.06% ANS/LDOX 1 0.06% HPPR 1 0.06% HYD1 1 0.06% FK 1 0.06% CPI1 1 0.06% DWF7 1 0.06% DWF1 1 0.06% HDR/IspH 1 0.06% CMK/IspE 1 0.06% PMK 1 0.06% DXR 1 0.06% DXS 1 0.06% HMGR 1 0.06% IDI 1 0.06%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Phenylpropanoid pathway	173	10	POD (95)	View species results
Terpenoid pathway	155	19	BAHD (57)	View species results
Alkaloid pathway	119	18	NMT (27)	View species results
Flavonoid pathway	88	8	UFGT (28)	View species results
Rosmarinic acid pathway	73	7	C4H (30)	View species results
Steroid pathway	40	12	CAS (17)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	600	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	109	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: BAHD

Gene	Pathway	Family	Confidence	Status	Best Target
CLame476920001490	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
CLame482940002980	Terpenoid	BAHD	low	borderline	BAHD__00093__sp_Q9SV07_ASAT1_ARATH
CLame542080007280	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
CLame564410008730	Terpenoid	BAHD	medium	pass	BAHD__00017__sp_F4IDU4_MBOA1_ARATH
CLame604960011100	Terpenoid	BAHD	medium	pass	BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
CLame604990011160	Terpenoid	BAHD	medium	pass	BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
CLame616240014200	Terpenoid	BAHD	medium	pass	BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ
CLame632130016110	Terpenoid	BAHD	medium	pass	BAHD__00062__sp_Q93V61_LCAT3_ARATH
CLame632820016700	Terpenoid	BAHD	low	borderline	BAHD__00043__sp_Q52T38_ZDH22_ARATH
CLame634000016930	Terpenoid	BAHD	medium	pass	BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
CLame635430017320	Terpenoid	BAHD	medium	pass	BAHD__00068__sp_Q9C533_ZDHC1_ARATH
CLame645130022860	Terpenoid	BAHD	medium	pass	BAHD__00062__sp_Q93V61_LCAT3_ARATH
CLame646220023990	Terpenoid	BAHD	low	borderline	BAHD__00097__sp_Q9ZV87_NAPES_ARATH
CLame646800024520	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
CLame648570027160	Terpenoid	BAHD	medium	pass	BAHD__00070__sp_Q9CAN8_MBOA2_ARATH
CLame648570027170	Terpenoid	BAHD	medium	pass	BAHD__00017__sp_F4IDU4_MBOA1_ARATH
CLame648720027440	Terpenoid	BAHD	medium	pass	BAHD__00021__sp_K7K424_DAT2D_SOYBN
CLame650320030680	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
CLame650330030760	Terpenoid	BAHD	low	borderline	BAHD__00092__sp_Q9SU91_LPXA_ARATH
CLame650700031630	Terpenoid	BAHD	medium	pass	BAHD__00014__sp_B9RK42_GPC1_RICCO
CLame652730036360	Terpenoid	BAHD	medium	pass	BAHD__00027__sp_O80437_GPAT6_ARATH
CLame654640042920	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
CLame654760043860	Terpenoid	BAHD	low	borderline	BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
CLame655110045520	Terpenoid	BAHD	medium	pass	BAHD__00043__sp_Q52T38_ZDH22_ARATH
CLame655180045910	Terpenoid	BAHD	medium	pass	BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE
CLame655260046320	Terpenoid	BAHD	medium	pass	BAHD__00030__sp_O80816_GLC_ARATH
CLame657740059090	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
CLame658270062480	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
CLame659550072090	Terpenoid	BAHD	medium	pass	BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
CLame659840074700	Terpenoid	BAHD	medium	pass	BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
CLame660240078100	Terpenoid	BAHD	medium	pass	BAHD__00047__sp_Q5KS41_WSD11_ARATH
CLame660240078130	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
CLame660820083420	Terpenoid	BAHD	medium	pass	BAHD__00023__sp_O22975_LPAAT_ARATH
CLame661040085740	Terpenoid	BAHD	medium	pass	BAHD__00025__sp_O64810_SCP10_ARATH
CLame661380088260	Terpenoid	BAHD	medium	pass	BAHD__00034__sp_P10349_GPAT2_CUCMO
CLame662200097900	Terpenoid	BAHD	medium	pass	BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
CLame662720103730	Terpenoid	BAHD	medium	pass	BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
CLame663330111760	Terpenoid	BAHD	low	borderline	BAHD__00093__sp_Q9SV07_ASAT1_ARATH
CLame663550114670	Terpenoid	BAHD	medium	pass	BAHD__00068__sp_Q9C533_ZDHC1_ARATH
CLame663850118480	Terpenoid	BAHD	medium	pass	BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
CLame663950119140	Terpenoid	BAHD	medium	pass	BAHD__00022__sp_K7PEY4_RAM2_MEDTR
CLame664120121240	Terpenoid	BAHD	low	borderline	BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
CLame664120121260	Terpenoid	BAHD	low	borderline	BAHD__00020__sp_K4D9Y4_ASAT3_SOLLC
CLame664220122690	Terpenoid	BAHD	low	borderline	BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
CLame664430125000	Terpenoid	BAHD	medium	pass	BAHD__00092__sp_Q9SU91_LPXA_ARATH
CLame664670128280	Terpenoid	BAHD	medium	pass	BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
CLame664880132840	Terpenoid	BAHD	medium	pass	BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
CLame664910133110	Terpenoid	BAHD	medium	pass	BAHD__00047__sp_Q5KS41_WSD11_ARATH
CLame664970134260	Terpenoid	BAHD	medium	pass	BAHD__00097__sp_Q9ZV87_NAPES_ARATH
CLame665140137860	Terpenoid	BAHD	medium	pass	BAHD__00058__sp_Q8LG50_LPAT2_ARATH