PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
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Gene Pathway Family Confidence Status
CLame480070002690 Phenylpropanoid C3'H/CYP98A medium pass
CLame532030005260 Phenylpropanoid C3'H/CYP98A medium borderline
CLame532200005650 Phenylpropanoid C3'H/CYP98A low borderline
CLame542720007420 Phenylpropanoid C3'H/CYP98A low borderline
CLame613670013600 Phenylpropanoid C3'H/CYP98A medium borderline
CLame618190014820 Phenylpropanoid C3'H/CYP98A low borderline
CLame635880017740 Phenylpropanoid C3'H/CYP98A medium borderline
CLame635880017760 Phenylpropanoid C3'H/CYP98A medium borderline
CLame640490019190 Phenylpropanoid C3'H/CYP98A medium borderline
CLame651650033530 Phenylpropanoid C3'H/CYP98A low borderline
CLame654100040570 Phenylpropanoid C3'H/CYP98A low borderline
CLame654160040860 Phenylpropanoid C3'H/CYP98A low borderline
CLame655200046040 Phenylpropanoid C3'H/CYP98A medium borderline
CLame656330051260 Phenylpropanoid C3'H/CYP98A low borderline
CLame656390051470 Phenylpropanoid C3'H/CYP98A low borderline
CLame656640052160 Phenylpropanoid C3'H/CYP98A medium borderline
CLame657090055350 Phenylpropanoid C3'H/CYP98A low borderline
CLame657090055360 Phenylpropanoid C3'H/CYP98A low borderline
CLame657460057200 Phenylpropanoid C3'H/CYP98A medium borderline
CLame658010060610 Phenylpropanoid C3'H/CYP98A medium borderline
CLame658110061190 Phenylpropanoid C3'H/CYP98A low borderline
CLame658110061250 Phenylpropanoid C3'H/CYP98A medium pass
CLame658330063090 Phenylpropanoid C3'H/CYP98A medium borderline
CLame658830066340 Phenylpropanoid C3'H/CYP98A medium borderline
CLame659810074340 Phenylpropanoid C3'H/CYP98A medium borderline
CLame660090077100 Phenylpropanoid C3'H/CYP98A medium borderline
CLame660150077420 Phenylpropanoid C3'H/CYP98A medium borderline
CLame661400088570 Phenylpropanoid C3'H/CYP98A medium borderline
CLame661600090380 Phenylpropanoid C3'H/CYP98A medium borderline
CLame662070096180 Phenylpropanoid C3'H/CYP98A medium borderline
CLame662790104520 Phenylpropanoid C3'H/CYP98A medium borderline
CLame662790104530 Phenylpropanoid C3'H/CYP98A low borderline
CLame662800104610 Phenylpropanoid C3'H/CYP98A medium borderline
CLame662800104660 Phenylpropanoid C3'H/CYP98A medium borderline
CLame663220110360 Phenylpropanoid C3'H/CYP98A medium borderline
CLame664070120390 Phenylpropanoid C3'H/CYP98A low borderline
CLame664140121290 Phenylpropanoid C3'H/CYP98A medium pass
CLame664320123820 Phenylpropanoid C3'H/CYP98A low borderline
CLame664610127640 Phenylpropanoid C3'H/CYP98A low borderline
CLame664750129650 Phenylpropanoid C3'H/CYP98A medium borderline
CLame664750129660 Phenylpropanoid C3'H/CYP98A medium pass
CLame664790130410 Phenylpropanoid C3'H/CYP98A high pass
CLame664860132530 Phenylpropanoid C3'H/CYP98A low borderline
CLame664860132540 Phenylpropanoid C3'H/CYP98A low borderline
CLame665010135670 Phenylpropanoid C3'H/CYP98A low borderline
CLame665170138640 Phenylpropanoid C3'H/CYP98A medium borderline
CLame665230139880 Phenylpropanoid C3'H/CYP98A medium borderline
CLame665230139890 Phenylpropanoid C3'H/CYP98A low borderline
CLame665490145190 Phenylpropanoid C3'H/CYP98A medium borderline
CLame665600147380 Phenylpropanoid C3'H/CYP98A medium borderline