PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
CLame478730002390 Flavonoid F3H medium pass
CLame608580012390 Flavonoid F3H medium borderline
CLame612860013040 Flavonoid F3H medium borderline
CLame635440017350 Flavonoid F3H low borderline
CLame648340026600 Flavonoid F3H medium borderline
CLame652050034760 Flavonoid F3H medium borderline
CLame654760043750 Flavonoid F3H low borderline
CLame655360046900 Flavonoid F3H medium borderline
CLame656870053970 Flavonoid F3H low borderline
CLame658970067800 Flavonoid F3H low borderline
CLame660190077790 Flavonoid F3H medium pass
CLame661900093620 Flavonoid F3H medium borderline
CLame661960094560 Flavonoid F3H medium borderline
CLame662120096730 Flavonoid F3H low borderline
CLame662190097610 Flavonoid F3H medium pass
CLame663010107620 Flavonoid F3H medium pass
CLame663550114690 Flavonoid F3H low borderline
CLame663940119120 Flavonoid F3H medium borderline
CLame664520126290 Flavonoid F3H medium borderline
CLame664880132930 Flavonoid F3H medium borderline
CLame665620147580 Flavonoid F3H medium borderline
CLame665800151160 Flavonoid F3H medium pass
CLame665900152830 Flavonoid F3H medium borderline
CLame666780171130 Flavonoid F3H medium borderline
CLame667260184350 Flavonoid F3H medium borderline
CLame667280185120 Flavonoid F3H low borderline
CLame667400188330 Flavonoid F3H medium borderline
CLame667400188340 Flavonoid F3H medium borderline
CLame667400188350 Flavonoid F3H medium borderline
CLame667490189740 Flavonoid F3H medium pass
CLame667680195850 Flavonoid F3H medium borderline
CLame667820200390 Flavonoid F3H medium borderline
CLame667820200550 Flavonoid F3H medium borderline
CLame667820200560 Flavonoid F3H medium pass
CLame667980205010 Flavonoid F3H low borderline
CLame668120208310 Flavonoid F3H medium borderline
CLame668330215170 Flavonoid F3H medium borderline
CLame668370216730 Flavonoid F3H medium borderline
CLame668460219570 Flavonoid F3H low borderline
CLame668460219590 Flavonoid F3H medium borderline
CLame668920231180 Flavonoid F3H medium borderline
CLame669030233110 Flavonoid F3H medium borderline