PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
CLame450180000300 Flavonoid 4CL low borderline
CLame613060013190 Flavonoid 4CL medium pass
CLame655000045090 Flavonoid 4CL medium pass
CLame655460047170 Flavonoid 4CL medium pass
CLame655710048510 Flavonoid 4CL low borderline
CLame655950049240 Flavonoid 4CL low borderline
CLame657010054920 Flavonoid 4CL low borderline
CLame661600090410 Flavonoid 4CL low borderline
CLame662390099540 Flavonoid 4CL low borderline
CLame662390099550 Flavonoid 4CL medium pass
CLame662930106330 Flavonoid 4CL low borderline
CLame664210122040 Flavonoid 4CL medium pass
CLame664210122340 Flavonoid 4CL low borderline
CLame664750129690 Flavonoid 4CL medium pass
CLame665490145270 Flavonoid 4CL low borderline
CLame667210183040 Flavonoid 4CL medium pass
CLame667210183050 Flavonoid 4CL medium pass
CLame667720197330 Flavonoid 4CL medium pass
CLame667750198700 Flavonoid 4CL medium pass
CLame667970204550 Flavonoid 4CL medium pass
CLame668070207380 Flavonoid 4CL low borderline
CLame668220211600 Flavonoid 4CL medium pass
CLame668500221040 Flavonoid 4CL low borderline
CLame668690226430 Flavonoid 4CL medium pass
CLame668690226670 Flavonoid 4CL medium pass
CLame668850229430 Flavonoid 4CL low borderline
CLame632150016130 Flavonoid ANR medium borderline
CLame657490057580 Flavonoid ANR medium borderline
CLame662740104010 Flavonoid ANR low borderline
CLame664400124720 Flavonoid ANR medium borderline
CLame665430143820 Flavonoid ANR medium borderline
CLame666630167910 Flavonoid ANR medium borderline
CLame667790199700 Flavonoid ANR medium borderline
CLame649850029450 Flavonoid ANS/LDOX medium borderline
CLame654160040850 Flavonoid C4H low borderline
CLame660090077100 Flavonoid C4H medium borderline
CLame666030155420 Flavonoid C4H low borderline
CLame667510190550 Flavonoid C4H medium borderline
CLame668030206420 Flavonoid C4H low borderline
CLame669080234670 Flavonoid C4H medium borderline
CLame653020037370 Flavonoid CHI medium pass
CLame659200068610 Flavonoid CHI medium pass
CLame666360162260 Flavonoid CHI low borderline
CLame668150210220 Flavonoid CHI medium pass
CLame635670017530 Flavonoid CHS medium pass
CLame640360018990 Flavonoid CHS medium pass
CLame647380025560 Flavonoid CHS medium pass
CLame649250028480 Flavonoid CHS medium pass
CLame653810039790 Flavonoid CHS medium pass
CLame654390042080 Flavonoid CHS medium pass